Basic Information
Locus ID:
Oco01G012350
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 17006936 | 17012774 | + | Oco01G012350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.90 | 88,638.20 Da | 71.55 | 61.36 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 377 | 506 | 1.02057E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 182 | 351 | 2.1E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 388 | 497 | 4.7E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 21 | 58 | 5.48E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 230 | 514 | 2.2E-74 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 20 | 66 | 1.7E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 367 | 6.6E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 368 | 538 | 6.5E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 177 | 380 | 5.6E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 417 | 497 | 2.5E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 25 | 58 | 7.7E-5 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 158 | 186 | 11.832287 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 392 | 536 | 25.496922 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 24 | 58 | 10.9747 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 189 | 363 | 30.653913 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 309 | 317 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 30 | 56 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 758 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_052160851.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X1 [Oryza glaberrima] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1E2K4 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_027655 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology