Basic Information
Locus ID:
Oco01G012050
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain of unknown function (DUF3403)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 16423958 | 16428299 | - | Oco01G012050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.44 | 50,372.00 Da | 44.40 | 86.74 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 287 | 321 | 0.00159699 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 176 | 256 | 1.4E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 363 | 446 | 1.5E-15 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 33 | 130 | 3.9E-14 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 341 | 453 | 9.55E-29 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 322 | 436 | 2.2E-38 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 153 | 259 | 9.1E-20 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 29 | 133 | 4.5E-18 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 152 | 259 | 17.312592 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 361 | 460 | 14.676052 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 30 | 133 | 16.081507 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 367 | 389 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_012701442.1 | cysteine-rich receptor-like protein kinase 15 [Setaria italica] | 0 |
| Q0D5R2 | Cysteine-rich receptor-like protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9YA42 | Cysteine-rich receptor-like protein kinase 25 OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH02.1996, CH02.2153 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0019950, gene-QOZ80_1BG0069640 |
| Poaceae | Oryza coarctata | 1 | Oco01G012050 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G009140 |