Basic Information
Locus ID:
Oco01G011920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cotton fibre expressed protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 16176139 | 16177397 | - | Oco01G011920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.86 | 26,337.46 Da | 58.66 | 87.76 | -0.08 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040380680.1 | uncharacterized protein LOC102713785 [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1DYK6 | DUF4408 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_017102 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21546, jg24560 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12230 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008832, Ah008833 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18264, Sbi_jg36620 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4605 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23416, Sgl28541 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029932, gene:ENSEOMG00000043679 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0023040, CQ.Regalona.r1.4AG0023050 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30153350, pistato.v30155980 |
| Apiaceae | Apium graveolens | 1 | Ag4G02402 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G009400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713948 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2795.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g07930 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g01750 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1920, evm.TU.LG05.1921 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03414 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0614920.1.CDS1 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G011920, Oco02G012160 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g34790.1 |
| Poaceae | Thinopyrum elongatum | 3 | Tel6E01G547700, Tel7E01G719600, Tel7E01G719800 |
| Poaceae | Triticum aestivum | 15 | TraesCS6A02G305700.1.cds1, TraesCS6B02G334100.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41929 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g01390, gene.Posoc04g23290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1583 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19580, nbisL1-mrna-8693 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10182 |
| Rhizophoraceae | Ceriops zippeliana | 11 | nbisL1-mrna-14060, nbisL1-mrna-15105, nbisL1-mrna-21065 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000018l.32, add.evm.TU.utg000028l.44 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003840 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20487 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22692 |
| Salicaceae | Populus euphratica | 2 | populus_peu17871, populus_peu17872 |
| Solanaceae | Solanum chilense | 2 | SOLCI001046000, SOLCI002513100 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12127, gene_12128 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0386 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00920.v3.1, Zosma06g17790.v3.1 |