Basic Information
Locus ID:
Oco01G011340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 15116169 | 15117274 | + | Oco01G011340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 26,489.39 Da | 48.06 | 87.35 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 44 | 93 | 1.0E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 122 | 143 | 0.13 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 6 | 148 | 1.52E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 77 | 2.3E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 78 | 236 | 1.1E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 84 | 117 | 1.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 47 | 74 | 4.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 122 | 145 | 4.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 17 | 46 | 4.5E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 45 | 79 | 10.851745 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11290.1 | Pentatricopeptide repeat (PPR) superfamily protein. Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity. | 0 |
| RefSeq | XP_015632996.1 | pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Oryza sativa Japonica Group] | 0 |
| Q3E6Q1 | Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1 | 0 | |
| TrEMBL | Q75LG4 | Os03g0624800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g42650 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24052 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208140 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1305.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g30230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g015650.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0078 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0068400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0292580.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024169, gene-QYE76_025379, gene-QYE76_072021 |
| Poaceae | Oryza coarctata | 1 | Oco01G011340 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g33070.1, LOC_Os03g42650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G458200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203294, Pt_Chr0700218 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G011860, Chr12G024800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G504300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG045390 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G322700.1.cds1, TraesCS3B02G342936.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb413360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52402 |
| Salicaceae | Populus euphratica | 1 | populus_peu23603 |