Basic Information
Locus ID:
Oco01G010940
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 14372080 | 14372951 | + | Oco01G010940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 21,993.15 Da | 48.22 | 79.51 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 132 | 194 | 9.61269E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 57 | 117 | 7.4E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 130 | 193 | 4.1E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 43 | 194 | 2.17E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 23 | 125 | 5.4E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 126 | 200 | 1.3E-22 | - |
| SMART | SM00054 | efh_1 | 92 | 120 | 0.068 | IPR002048 |
| SMART | SM00054 | efh_1 | 132 | 160 | 1.9E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 168 | 196 | 4.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 56 | 84 | 2.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 10.329096 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 164 | 199 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 128 | 163 | 14.652882 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 52 | 87 | 14.597092 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 177 | 189 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 65 | 77 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 141 | 153 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_052139916.1 | probable calcium-binding protein CML11 [Oryza glaberrima] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0GJ85 | Calcium-binding protein CML11 OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology