Basic Information
Locus ID:
Oco01G010760
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 13789745 | 13795855 | - | Oco01G010760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 56,677.32 Da | 48.02 | 83.87 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 333 | 507 | 5.27441E-106 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 331 | 436 | 8.8E-16 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 6 | 99 | 1.8E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 333 | 463 | 2.48E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 319 | 509 | 2.0E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 133 | 1.4E-29 | - |
| SMART | SM00232 | pad1_6 | 332 | 460 | 4.7E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 332 | 463 | 24.963499 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_015621980.1 | AMSH-like ubiquitin thioesterase 3 [Oryza sativa Japonica Group] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | Q5QLJ2 | Os01g0499300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0499300 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology