Basic Information
Locus ID:
Oco01G010360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 12631153 | 12636286 | + | Oco01G010360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 86,903.43 Da | 41.61 | 89.33 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 36 | 648 | 4.6E-170 | IPR001373 |
| Pfam | PF10557 | Cullin protein neddylation domain | 675 | 737 | 4.5E-25 | IPR019559 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 390 | 661 | 1.28E-85 | IPR036317 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 11 | 385 | 9.16E-99 | IPR016159 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 660 | 745 | 3.08E-26 | IPR036390 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 142 | 262 | 5.8E-34 | - |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 508 | 660 | 2.8E-48 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 391 | 504 | 2.6E-35 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 662 | 745 | 7.3E-30 | IPR036388 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 267 | 390 | 1.0E-34 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 6 | 141 | 1.0E-35 | - |
| SMART | SM00182 | cul_2 | 421 | 570 | 2.5E-65 | IPR016158 |
| SMART | SM00884 | Cullin_Nedd8_2 | 672 | 739 | 1.1E-32 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 390 | 620 | 47.353733 | IPR016158 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02570.1 | cullin 1. Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. | 0 |
| RefSeq | XP_052141078.1 | cullin-1-like [Oryza glaberrima] | 0 |
| Q94AH6 | Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JIX1 | CULLIN_2 domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology