Basic Information
Locus ID:
Oco01G010200
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 12097616 | 12101478 | - | Oco01G010200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 104,720.81 Da | 42.57 | 86.30 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 608 | 876 | 6.8401E-85 | - |
| CDD | cd00054 | EGF_CA | 477 | 506 | 3.37168E-6 | - |
| Pfam | PF00069 | Protein kinase domain | 604 | 869 | 6.7E-44 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 319 | 372 | 9.1E-11 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 40 | 94 | 1.8E-10 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 584 | 873 | 5.8E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 678 | 899 | 7.6E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 569 | 677 | 5.1E-31 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 427 | 513 | 2.0E-9 | - |
| SMART | SM00220 | serkin_6 | 602 | 876 | 2.0E-30 | IPR000719 |
| SMART | SM00181 | egf_5 | 426 | 476 | 31.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 260 | 307 | 180.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 477 | 517 | 8.0E-7 | IPR001881 |
| SMART | SM00181 | egf_5 | 480 | 517 | 1.1 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 602 | 876 | 35.778114 | IPR000719 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 477 | 500 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 608 | 631 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 724 | 736 | - | IPR008271 |
| Coils | Coil | Coil | 866 | 886 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_039847583.1 | wall-associated receptor kinase 2-like isoform X1 [Panicum virgatum] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EXR3 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_021535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH01.3275, BH01.3663, CH01.3846, CH01.3847, CH02.1873 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0531690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059598, gene-QYE76_060264 |
| Poaceae | Oryza coarctata | 3 | Oco01G010200, Oco05G028540, Oco06G029580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105226, Pt_Chr0106279 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G818100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052310, gene_TRIDC5BG078330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347600.1, TraesCS5B02G526000.1 ... |