Basic Information
Locus ID:
Oco01G009430
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 10714436 | 10716170 | + | Oco01G009430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 45,954.36 Da | 48.99 | 74.29 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 74 | 396 | 1.3E-76 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 38 | 434 | 2.1E-110 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 25 | 441 | 1.6E-102 | IPR012334 |
| SMART | SM00710 | pbh1 | 284 | 305 | 10.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 231 | 252 | 130.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 204 | 230 | 2000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 254 | 274 | 930.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_015622255.1 | polygalacturonase At1g48100 [Oryza sativa Japonica Group] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JHX7 | Polygalacturonase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology