Basic Information
Locus ID:
Oco01G008720
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 9362325 | 9364770 | + | Oco01G008720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 52,010.82 Da | 39.51 | 78.04 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 137 | 449 | 1.6E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 105 | 479 | 1.23E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 98 | 479 | 8.6E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 288 | 309 | 65.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 370 | 391 | 7600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 341 | 362 | 2.1 | IPR006626 |
| SMART | SM00710 | pbh1 | 261 | 287 | 560.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 311 | 331 | 2100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 318 | 331 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 75 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_006645792.2 | polygalacturonase At1g48100-like [Oryza brachyantha] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DWT4 | Polygalacturonase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015101 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology