Basic Information
Locus ID:
Oco01G006840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 7054044 | 7062712 | - | Oco01G006840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 124,898.03 Da | 40.86 | 77.58 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 909 | 941 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 440 | 476 | 6.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 828 | 1090 | 1.08E-38 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 338 | 650 | 1.74E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 317 | 528 | 2.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 743 | 958 | 3.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 529 | 667 | 3.6E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 959 | 1089 | 2.4E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 903 | 942 | 4.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 820 | 857 | 80.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.4E-14 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 860 | 900 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1057 | 1089 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 608 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 992 | 1034 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 0.0056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 478 | 519 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 476 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 565 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 170.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 477 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.714034 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 377 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 586 | 617 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 910 | 951 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 442 | 477 | 8.729241 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 910 | 941 | 9.599237 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 463 | 477 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 595 | 609 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | NP_001393343.1 | protein TPR1 isoform 1 [Oryza sativa Japonica Group] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JGH5 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology