Basic Information
Locus ID:
Oco01G005800
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 6043854 | 6047818 | + | Oco01G005800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 27,637.83 Da | 46.06 | 64.71 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 34 | 248 | 3.7E-74 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 150 | 238 | 3.04E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 147 | 251 | 2.0E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 152 | 239 | 25.983263 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_052161479.1 | auxin-responsive protein IAA3 [Oryza glaberrima] | 0 |
| Q5NB25 | Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DXL3 | Auxin-responsive protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_017521 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology