Basic Information
Locus ID:
Oco01G005570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 5773377 | 5779485 | - | Oco01G005570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 93,561.44 Da | 47.28 | 89.92 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 569 | 702 | 4.28677E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 571 | 701 | 1.7E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 727 | 768 | 8.4E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 531 | 771 | 2.05E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 530 | 812 | 9.7E-96 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 40 | 347 | 1.3E-5 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 703 | 805 | 9.7E-96 | - |
| SMART | SM00382 | AAA_5 | 567 | 704 | 5.3E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 674 | 693 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 235 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_015627525.1 | uncharacterized protein LOC4326743 [Oryza sativa Japonica Group] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0JFU8 | AAA domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology