Basic Information
Locus ID:
Oco01G003010
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2867199 | 2873485 | + | Oco01G003010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 164,921.94 Da | 39.07 | 103.53 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 327 | 614 | 3.25843E-94 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1264 | 1484 | 4.69704E-118 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 640 | 840 | 1.97136E-95 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 947 | 1241 | 1.03307E-92 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1284 | 1431 | 7.2E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 331 | 591 | 4.3E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 949 | 1191 | 6.9E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 658 | 792 | 5.5E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 935 | 1246 | 5.89E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 637 | 862 | 6.53E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 316 | 622 | 5.76E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1256 | 1496 | 5.23E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1249 | 1502 | 2.8E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 910 | 1243 | 1.8E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 304 | 622 | 3.0E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 627 | 874 | 2.4E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 667 | 840 | 1.0E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1292 | 1483 | 4.2E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 949 | 1229 | 36.672302 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1266 | 1500 | 16.340008 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 640 | 863 | 22.869253 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 326 | 606 | 29.71508 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 765 | 779 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 921 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_015617486.1 | ABC transporter C family member 3 [Oryza sativa Japonica Group] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0MS12 | ABC transporter C family member 3 OS=Oryza rufipogon OX=4529 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology