Basic Information
Locus ID:
Oco01G002920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2803735 | 2808735 | - | Oco01G002920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 76,816.54 Da | 51.06 | 64.95 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 394 | 523 | 1.4764E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 406 | 514 | 1.9E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 199 | 369 | 2.6E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 56 | 6.45E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 246 | 530 | 1.17E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 385 | 556 | 2.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 151 | 384 | 9.5E-87 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.7E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 434 | 514 | 2.0E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 194 | 397 | 1.8E-64 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 409 | 553 | 26.228893 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 175 | 203 | 11.728344 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 10.541301 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 206 | 380 | 31.829657 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 326 | 334 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 95 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | NP_001396156.1 | dEAD-box ATP-dependent RNA helicase 14 isoform 4 [Oryza sativa Japonica Group] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | B8ADH5 | ATP-dependent RNA helicase-like protein DB10 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_00586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology