Basic Information
Locus ID:
Oco01G002680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2560736 | 2564602 | + | Oco01G002680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 46,205.93 Da | 34.74 | 77.87 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 288 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 290 | 2.65E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 64 | 326 | 1.1E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 248 | 289 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 19 | 71 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.0032 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_015620970.1 | autophagy-related protein 18d [Oryza sativa Japonica Group] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0MRW3 | Autophagy-related protein 18d-like OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology