Basic Information
Locus ID:
Oco01G002570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2483873 | 2484976 | + | Oco01G002570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 28,225.91 Da | 31.95 | 83.56 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 212 | 2.5E-58 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 8 | 247 | 5.89E-55 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 2 | 169 | 1.4E-51 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 170 | 264 | 7.1E-41 | IPR016139 |
| ProSitePatterns | PS00275 | Shiga/ricin ribosomal inactivating toxins active site signature. | 162 | 178 | - | IPR017988 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 158 | 178 | 9.0E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 67 | 82 | 9.0E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 9.0E-7 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040385856.1 | protein synthesis inhibitor II-like [Oryza brachyantha] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JEJ1 | rRNA N-glycosylase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology