Basic Information
Locus ID:
Oco01G002410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2352394 | 2355916 | - | Oco01G002410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 64,017.25 Da | 34.41 | 85.60 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 396 | 578 | 2.26313E-92 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 34 | 198 | 1.84609E-87 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 441 | 566 | 3.2E-16 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 231 | 348 | 2.7E-21 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 31 | 202 | 4.4E-37 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 220 | 372 | 1.59E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 396 | 590 | 3.4E-44 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 31 | 212 | 1.47E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 221 | 383 | 9.1E-43 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 390 | 580 | 2.7E-58 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 28 | 206 | 1.2E-58 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 25 | 590 | 3.2E-211 | IPR012110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 168 | 188 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_006643782.2 | pyruvate decarboxylase 2-like [Oryza brachyantha] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0D9Y3K4 | pyruvate decarboxylase OS=Oryza glumipatula OX=40148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology