Basic Information
Locus ID:
Oco01G002360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2301470 | 2308640 | - | Oco01G002360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 54,625.06 Da | 50.37 | 63.22 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 455 | 496 | 1.88038E-17 | - |
| Pfam | PF13639 | Ring finger domain | 454 | 496 | 7.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 446 | 497 | 9.66E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 420 | 500 | 7.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 455 | 495 | 9.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 455 | 496 | 13.167916 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 246 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015620967.1 | E3 ubiquitin-protein ligase MBR1 [Oryza sativa Japonica Group] | 0 |
| Q7XTV7 | Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0BXG1 | RING-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology