halophFGD

Basic Information

Locus ID: Oco01G001420

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: EF-hand domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG01	1520586	1521645	-	Oco01G001420

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.66	27,525.05 Da	43.71	73.03	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	107	172	5.45221E-16	IPR002048
CDD	cd00051	EFh	180	241	1.54998E-22	IPR002048
Pfam	PF13499	EF-hand domain pair	180	241	2.4E-13	IPR002048
Pfam	PF13499	EF-hand domain pair	107	171	2.6E-10	IPR002048
SUPERFAMILY	SSF47473	EF-hand	105	243	7.99E-38	IPR011992
Gene3D	G3DSA:1.10.238.10	-	69	175	1.1E-17	-
Gene3D	G3DSA:1.10.238.10	-	177	244	9.6E-22	-
SMART	SM00054	efh_1	180	208	9.1E-6	IPR002048
SMART	SM00054	efh_1	107	135	4.8E-5	IPR002048
SMART	SM00054	efh_1	147	175	0.021	IPR002048
SMART	SM00054	efh_1	216	244	0.001	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	176	211	14.708673	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	103	138	12.839682	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	212	247	12.198088	IPR002048
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	225	237	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	189	201	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	116	128	-	IPR018247

Gene Ontology

Molecular Function:

GO:0005509 (calcium ion binding)

KEGG Pathway

KO Term:

K13448 (calcium-binding protein CML)

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G18210.1	Calcium-binding EF-hand family protein.
RefSeq	XP_052140809.1	probable calcium-binding protein CML16 [Oryza glaberrima]
Swiss-Prot	Q5ZCK5	Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica OX=39947 GN=CML16 PE=2 SV=1
TrEMBL	A0A0D3EJB4	Calcium-binding protein CML19 OS=Oryza barthii OX=65489 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	15	jg1077, jg13334, jg15855, jg1838, jg19591, jg19682, jg27010 ... jg29265, jg30657, jg30777, jg31349, jg39860, jg4281, jg5136, jg7367
Aizoaceae	Mesembryanthemum crystallinum	6	gene_1147, gene_17307, gene_22745, gene_23231, gene_4609 ... gene_8687
Amaranthaceae	Atriplex hortensis	5	Ah022059, Ah023165, Ah025037, Ah035591, Ah036029
Amaranthaceae	Beta vulgaris	3	BVRB_1g005460, BVRB_2g027860, BVRB_3g062390
Amaranthaceae	Salicornia bigelovii	14	Sbi_jg13007, Sbi_jg21642, Sbi_jg22171, Sbi_jg28957 ... Sbi_jg2978, Sbi_jg39345, Sbi_jg39941, Sbi_jg4339, Sbi_jg49488, Sbi_jg52864, Sbi_jg55008, Sbi_jg55272, Sbi_jg59453, Sbi_jg63198
Amaranthaceae	Salicornia europaea	7	Seu_jg11182, Seu_jg14396, Seu_jg16104, Seu_jg23699 ... Seu_jg5757, Seu_jg6900, Seu_jg9004
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00000950, GOSA_00000951, GOSA_00008715, GOSA_00010240 ... GOSA_00014166, GOSA_00020697, GOSA_00025936
Amaranthaceae	Suaeda glauca	17	Sgl02830, Sgl07951, Sgl10669, Sgl11257, Sgl12078, Sgl12272 ... Sgl13266, Sgl15925, Sgl16649, Sgl17372, Sgl17502, Sgl18479, Sgl33956, Sgl39352, Sgl62654, Sgl67214, Sgl67275
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000003500, gene:ENSEOMG00000009819 ... gene:ENSEOMG00000012685, gene:ENSEOMG00000013482, gene:ENSEOMG00000014874, gene:ENSEOMG00000017454, gene:ENSEOMG00000019903, gene:ENSEOMG00000020888, gene:ENSEOMG00000026294, gene:ENSEOMG00000031841, gene:ENSEOMG00000032895, gene:ENSEOMG00000033630, gene:ENSEOMG00000034038, gene:ENSEOMG00000035293, gene:ENSEOMG00000045378, gene:ENSEOMG00000047205, gene:ENSEOMG00000047858, gene:ENSEOMG00000049090, gene:ENSEOMG00000050095, gene:ENSEOMG00000050364
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.1AG0006170, CQ.Regalona.r1.1AG0009810 ... CQ.Regalona.r1.1AG0016710, CQ.Regalona.r1.1AG0022330, CQ.Regalona.r1.1BG0008890, CQ.Regalona.r1.1BG0015950, CQ.Regalona.r1.2AG0018320, CQ.Regalona.r1.2BG0019990, CQ.Regalona.r1.2BG0023550, CQ.Regalona.r1.3AG0022250, CQ.Regalona.r1.3BG0022960, CQ.Regalona.r1.6BG0026400
Anacardiaceae	Pistacia vera	4	pistato.v30003120, pistato.v30112860, pistato.v30190570 ... pistato.v30218230
Apiaceae	Apium graveolens	11	Ag10G02306, Ag2G01522, Ag3G00664, Ag5G00371, Ag5G01933 ... Ag6G01137, Ag7G02484, Ag8G01879, Ag9G02220, AgUnG00163, AgUnG00165
Arecaceae	Cocos nucifera	11	COCNU_02G006330, COCNU_02G009380, COCNU_03G008720 ... COCNU_04G008350, COCNU_05G004570, COCNU_07G001250, COCNU_16G002450, COCNU_16G002470, scaffold000395G000010, scaffold003807G000010, scaffold007678G000030
Arecaceae	Phoenix dactylifera	15	gene-LOC103698957, gene-LOC103701877, gene-LOC103705076 ... gene-LOC103705626, gene-LOC103707038, gene-LOC103707737, gene-LOC103714666, gene-LOC103714667, gene-LOC103718387, gene-LOC103720727, gene-LOC103720953, gene-LOC103720954, gene-LOC120111540, gene-LOC120111542, gene-LOC120111772
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.2645.V1.1, AsparagusV1_07.1601.V1.1 ... AsparagusV1_08.2351.V1.1, AsparagusV1_08.2889.V1.1, AsparagusV1_08.3007.V1.1
Asteraceae	Flaveria trinervia	13	Ftri10G15561, Ftri11G01998, Ftri11G16613, Ftri11G19072 ... Ftri13G01139, Ftri17G19711, Ftri18G07549, Ftri18G18637, Ftri1G07266, Ftri5G22204, Ftri8G25483, Ftri9G04162, FtriNA22275
Brassicaceae	Arabidopsis thaliana	9	AT1G18210.1, AT1G24620.1, AT1G66400.1, AT1G73630.1 ... AT2G15680.1, AT2G41410.1, AT3G03400.1, AT3G10190.1, AT5G37770.1
Brassicaceae	Eutrema salsugineum	9	Thhalv10008816m.g.v1.0, Thhalv10008945m.g.v1.0 ... Thhalv10017207m.g.v1.0, Thhalv10019258m.g.v1.0, Thhalv10019556m.g.v1.0, Thhalv10021512m.g.v1.0, Thhalv10022417m.g.v1.0, Thhalv10022869m.g.v1.0, Thhalv10027972m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g16200.v2.2, Sp1g23150.v2.2, Sp3g02400.v2.2 ... Sp3g08470.v2.2, Sp3g28920.v2.2, Sp4g23680.v2.2, Sp5g21470.v2.2, Sp7g04260.v2.2, SpUn0647_0010.v2.2
Brassicaceae	Brassica nigra	11	BniB01g004100.2N, BniB01g024100.2N, BniB01g054790.2N ... BniB03g018070.2N, BniB03g032270.2N, BniB03g043640.2N, BniB03g051970.2N, BniB04g026810.2N, BniB04g032690.2N, BniB04g041200.2N, BniB06g000630.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq03G2839, Ceq04G0970, Ceq05G1305, Ceq07G2154, Ceq08G0654 ... Ceq09G0850
Casuarinaceae	Casuarina glauca	8	Cgl02G0510, Cgl03G2992, Cgl04G1097, Cgl05G1309, Cgl05G1310 ... Cgl07G2384, Cgl08G0629, Cgl09G0919
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g00890, gene.Cymno03g12750, gene.Cymno03g13480 ... gene.Cymno04g11480, gene.Cymno04g11490, gene.Cymno05g12490, gene.Cymno11g07200
Dunaliellaceae	Dunaliella salina	2	Dusal.0040s00023.v1.0, Dusal.0584s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	8	gene.Thate01g30080, gene.Thate01g30120, gene.Thate02g01160 ... gene.Thate05g04110, gene.Thate06g06890, gene.Thate07g00450, gene.Thate07g05240, gene.Thate09g04810
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11866, nbisL1-mrna-2705, nbisL1-mrna-8424
Nitrariaceae	Nitraria sibirica	7	evm.TU.LG01.2535, evm.TU.LG02.581, evm.TU.LG03.1178 ... evm.TU.LG04.200, evm.TU.LG08.10, evm.TU.LG08.831, evm.TU.LG10.94
Plantaginaceae	Plantago ovata	9	Pov_00006802, Pov_00012064, Pov_00013808, Pov_00018641 ... Pov_00026865, Pov_00029844, Pov_00032232, Pov_00033215, Pov_00033688
Poaceae	Echinochloa crus-galli	20	AH02.4501, AH02.4505, AH02.774, AH03.2173, AH04.236 ... AH05.2665, AH05.3558, AH05.594, BH02.4552, BH04.231, BH05.179, BH05.645, BH08.1727, CH01.1221, CH02.4605, CH02.4607, CH02.866, CH04.247, CH05.2813, CH05.746
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_1AG0008660, gene-QOZ80_1AG0046410 ... gene-QOZ80_1AG0046430, gene-QOZ80_1BG0057390, gene-QOZ80_1BG0096400, gene-QOZ80_1BG0096420, gene-QOZ80_5AG0375250, gene-QOZ80_5AG0380710, gene-QOZ80_5AG0401090, gene-QOZ80_5BG0427790, gene-QOZ80_5BG0449690, gene-QOZ80_6AG0537620, gene-QOZ80_6BG0490850, gene-QOZ80_9BG0697800
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0031820.1 ... HORVU.MOREX.r3.1HG0059290.1.CDS1, HORVU.MOREX.r3.3HG0226060.1.CDS1, HORVU.MOREX.r3.3HG0319990.1.CDS1, HORVU.MOREX.r3.3HG0320050.1.CDS1, HORVU.MOREX.r3.5HG0461160.1.CDS1, HORVU.MOREX.r3.5HG0486640.1.CDS1, HORVU.MOREX.r3.7HG0658340.1.CDS1
Poaceae	Lolium multiflorum	19	gene-QYE76_003342, gene-QYE76_003362, gene-QYE76_003462 ... gene-QYE76_005689, gene-QYE76_010510, gene-QYE76_048956, gene-QYE76_048957, gene-QYE76_048958, gene-QYE76_048959, gene-QYE76_048960, gene-QYE76_048961, gene-QYE76_048962, gene-QYE76_048964, gene-QYE76_048965, gene-QYE76_048966, gene-QYE76_048967, gene-QYE76_048968, gene-QYE76_058042, gene-QYE76_058050
Poaceae	Oryza coarctata	6	Oco01G001420, Oco01G029910, Oco02G001400, Oco02G031070 ... Oco10G008490, Oco22G001560
Poaceae	Oryza sativa	7	LOC_Os01g04330.1, LOC_Os01g72080.1, LOC_Os01g72100.1 ... LOC_Os05g13580.1, LOC_Os05g31620.1, LOC_Os11g04560.1, LOC_Os12g04360.1
Poaceae	Paspalum vaginatum	7	gene-BS78_02G205000, gene-BS78_03G074400 ... gene-BS78_03G401100, gene-BS78_03G401300, gene-BS78_05G038700, gene-BS78_09G088400, gene-BS78_09G126600
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0205563, Pt_Chr0205565, Pt_Chr0205655, Pt_Chr0207372 ... Pt_Chr0605930, Pt_Chr0605933, Pt_Chr0605940, Pt_Chr0702996, Pt_Chr0703075
Poaceae	Sporobolus alterniflorus	18	Chr01G021550, Chr02G001070, Chr02G001090, Chr02G024010 ... Chr03G003800, Chr05G001980, Chr05G033600, Chr08G001200, Chr0G028260, Chr0G028790, Chr12G016480, Chr16G009150, Chr17G008170, Chr18G007790, Chr19G011990, Chr22G009730, Chr22G012530, Chr27G003980
Poaceae	Thinopyrum elongatum	6	Tel1E01G233700, Tel1E01G396000, Tel3E01G080900 ... Tel3E01G783700, Tel3E01G785800, Tel5E01G387700
Poaceae	Triticum dicoccoides	14	gene_TRIDC1AG018980, gene_TRIDC1AG036060 ... gene_TRIDC1BG041260, gene_TRIDC2BG080810, gene_TRIDC3AG004190, gene_TRIDC3AG068730, gene_TRIDC3AG068780, gene_TRIDC3AG068880, gene_TRIDC3BG006110, gene_TRIDC3BG077920, gene_TRIDC3BG077960, gene_TRIDC5AG022060, gene_TRIDC5AG037750, gene_TRIDC5BG023790
Poaceae	Triticum aestivum	23	TraesCS1A02G134000.1.cds1, TraesCS1A02G238800.1.cds1 ... TraesCS1B02G148000.1.cds1, TraesCS1B02G250900.1.cds1, TraesCS1D02G125800.1.cds1, TraesCS1D02G239000.1.cds1, TraesCS3A02G038300.1.cds1, TraesCS3A02G488400.1.cds1, TraesCS3A02G488700.1.cds1, TraesCS3B02G045500.1.cds1, TraesCS3B02G536200.1.cds1, TraesCS3B02G536600.1.cds1, TraesCS3B02G538300.1.cds1, TraesCS3D02G041400.1.cds1, TraesCS3D02G041500.1.cds1, TraesCS3D02G483200.1.cds1, TraesCS3D02G484600.1.cds1, TraesCS3D02G484900.1.cds1, TraesCS5A02G238900.1.cds1, TraesCS5B02G134200.1.cds1, TraesCS5B02G237500.1.cds1, TraesCS5D02G141900.1.cds1, TraesCS5D02G246000.1.cds1
Poaceae	Zea mays	7	Zm00001eb093210_P001, Zm00001eb125050_P001 ... Zm00001eb141120_P001, Zm00001eb141130_P001, Zm00001eb286870_P001, Zm00001eb314950_P001, Zm00001eb347180_P001
Poaceae	Zoysia japonica	11	nbis-gene-10835, nbis-gene-12962, nbis-gene-1674 ... nbis-gene-27030, nbis-gene-28166, nbis-gene-28167, nbis-gene-38728, nbis-gene-40142, nbis-gene-46389, nbis-gene-55939, nbis-gene-7031
Poaceae	Zoysia macrostachya	12	Zma_g11933, Zma_g11934, Zma_g1258, Zma_g17541, Zma_g18396 ... Zma_g25482, Zma_g28144, Zma_g30444, Zma_g32672, Zma_g9374, Zma_g9376, Zma_g9922
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.284, evm.TU.LG01.716, evm.TU.LG01.988 ... evm.TU.LG04.1612, evm.TU.LG04.59, evm.TU.LG07.421, evm.TU.LG10.1288, evm.TU.LG13.1276, evm.TU.LG15.522, evm.TU.LG19.803, evm.TU.LG21.905, evm.TU.LG23.13, evm.TU.LG24.802, evm.TU.LG25.588
Posidoniaceae	Posidonia oceanica	8	gene.Posoc01g21560, gene.Posoc01g26610, gene.Posoc01g26700 ... gene.Posoc02g19680, gene.Posoc02g31120, gene.Posoc02g33150, gene.Posoc02g33200, gene.Posoc08g09400
Rhizophoraceae	Bruguiera sexangula	10	evm.TU.60356.14, evm.TU.Scaffold_11_RagTag.717 ... evm.TU.Scaffold_15_RagTag.240, evm.TU.Scaffold_17_RagTag.767, evm.TU.Scaffold_2_RagTag.310, evm.TU.Scaffold_4_RagTag.702, evm.TU.Scaffold_6_RagTag.1373, evm.TU.Scaffold_7_RagTag.1654, evm.TU.Scaffold_8_RagTag.149, evm.TU.Scaffold_9_RagTag.364
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-10190, nbisL1-mrna-1214, nbisL1-mrna-14380 ... nbisL1-mrna-16274, nbisL1-mrna-19883, nbisL1-mrna-26463, nbisL1-mrna-28656, nbisL1-mrna-4880
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-10740, nbisL1-mrna-12574, nbisL1-mrna-14013 ... nbisL1-mrna-15392, nbisL1-mrna-17916, nbisL1-mrna-19093, nbisL1-mrna-2811, nbisL1-mrna-4293
Rhizophoraceae	Ceriops zippeliana	10	nbisL1-mrna-1123, nbisL1-mrna-12338, nbisL1-mrna-13579 ... nbisL1-mrna-1663, nbisL1-mrna-17561, nbisL1-mrna-17779, nbisL1-mrna-20049, nbisL1-mrna-6427, nbisL1-mrna-7137, nbisL1-mrna-9828
Rhizophoraceae	Kandelia candel	11	add.evm.TU.utg000001l.71, add.evm.TU.utg000002l.30 ... add.evm.TU.utg000003l.107, add.evm.TU.utg000008l.165, add.evm.TU.utg000009l.279, add.evm.TU.utg000011l.313, add.evm.TU.utg000011l.472, add.evm.TU.utg000013l.151, add.evm.TU.utg000018l.357, add.evm.TU.utg000019l.321, add.evm.TU.utg000061l.1
Rhizophoraceae	Kandelia obovata	7	Maker00001020, Maker00003108, Maker00004303, Maker00006178 ... Maker00008674, Maker00009874, Maker00011626
Rhizophoraceae	Rhizophora apiculata	11	nbisL1-mrna-17114, nbisL1-mrna-17709, nbisL1-mrna-17953 ... nbisL1-mrna-18817, nbisL1-mrna-18818, nbisL1-mrna-19485, nbisL1-mrna-21039, nbisL1-mrna-21320, nbisL1-mrna-22075, nbisL1-mrna-22199, nbisL1-mrna-22582
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-11448, nbisL1-mrna-12347, nbisL1-mrna-12699 ... nbisL1-mrna-13168, nbisL1-mrna-13173, nbisL1-mrna-13182, nbisL1-mrna-14272, nbisL1-mrna-2711, nbisL1-mrna-3950, nbisL1-mrna-6076, nbisL1-mrna-8396
Salicaceae	Populus euphratica	8	populus_peu07211, populus_peu09635, populus_peu10879 ... populus_peu21203, populus_peu23403, populus_peu24887, populus_peu26232, populus_peu36349
Solanaceae	Lycium barbarum	10	gene-LOC132599049, gene-LOC132599794, gene-LOC132600028 ... gene-LOC132607430, gene-LOC132607465, gene-LOC132614077, gene-LOC132614488, gene-LOC132621879, gene-LOC132621881, gene-LOC132633211
Solanaceae	Solanum chilense	12	SOLCI000046900, SOLCI000422500, SOLCI001676100 ... SOLCI001737800, SOLCI002206700, SOLCI003445200, SOLCI003957600, SOLCI003966100, SOLCI004389300, SOLCI005040100, SOLCI006032500, SOLCI006090300
Solanaceae	Solanum pennellii	11	gene-LOC107005592, gene-LOC107009143, gene-LOC107009322 ... gene-LOC107012364, gene-LOC107015719, gene-LOC107016234, gene-LOC107022583, gene-LOC107028473, gene-LOC107028975, gene-LOC107031954, gene-LOC107032035
Tamaricaceae	Reaumuria soongarica	9	STRG.11569_chr02_+, STRG.141_chr01_+, STRG.14240_chr08_- ... STRG.15277_chr06_-, STRG.17109_chr08_+, STRG.25231_chr11_-, STRG.8748_chr03_+, gene_13409, gene_8794
Tamaricaceae	Tamarix chinensis	7	TC01G0175, TC01G3633, TC03G2680, TC05G1004, TC05G1371 ... TC11G0485, TC12G1899
Zosteraceae	Zostera marina	6	Zosma01g11910.v3.1, Zosma01g11940.v3.1, Zosma01g15140.v3.1 ... Zosma03g16940.v3.1, Zosma03g29960.v3.1, Zosma03g35080.v3.1