Basic Information
Locus ID:
MSTRG.8741_chr05_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
pre-mRNA-processing factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 60109855 | 60121626 | - | MSTRG.8741_chr05_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 13,916.75 Da | 56.27 | 107.68 | 0.30 |
Protein Domain:
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03430.1 | pre-mRNA splicing factor-related. Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. | 0 |
| RefSeq | XP_038704258.1 | protein STABILIZED1 [Tripterygium wilfordii] | 0 |
| Q9ZT71 | Protein STABILIZED1 OS=Arabidopsis thaliana OX=3702 GN=STA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7DIB6 | Pre-mRNA splicing factor-related OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G00139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg33482 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G306900 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04200 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.8741_chr05_- |