Basic Information
Locus ID:
MSTRG.5624_chr04_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 1829195 | 1831490 | - | MSTRG.5624_chr04_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 56,762.56 Da | 45.32 | 94.19 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 200 | 403 | 1.15E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 79 | 1.83E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 110 | 3.0E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 158 | 415 | 6.7E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 35 | 85 | 9.285514 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59150.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_020535934.2 | F-box protein At5g03100-like isoform X1 [Jatropha curcas] | 0 |
| Q9LX56 | F-box protein At3g59150 OS=Arabidopsis thaliana OX=3702 GN=At3g59150 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067LNB6 | F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55900.1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1166 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.38 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24763, nbisL1-mrna-24764 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.260 |
| Salicaceae | Populus euphratica | 1 | populus_peu04600 |
| Tamaricaceae | Reaumuria soongarica | 14 | MSTRG.13023_chr07_+, MSTRG.13852_chr08_-, MSTRG.4576_chr03_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1245, TC08G0764 |