Basic Information
Locus ID:
MSTRG.4804_chr03_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 21302281 | 21329738 | - | MSTRG.4804_chr03_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 58,798.94 Da | 40.46 | 101.82 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 209 | 410 | 3.34E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 46 | 106 | 2.22E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 39 | 89 | 4.3E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 194 | 460 | 8.2E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 47 | 94 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49030.2 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_020535934.2 | F-box protein At5g03100-like isoform X1 [Jatropha curcas] | 0 |
| TrEMBL | A0A067LNB6 | F-box domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55900.1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1166 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.38 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24763, nbisL1-mrna-24764 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.260 |
| Salicaceae | Populus euphratica | 1 | populus_peu04600 |
| Tamaricaceae | Reaumuria soongarica | 14 | MSTRG.13023_chr07_+, MSTRG.13852_chr08_-, MSTRG.4576_chr03_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1245, TC08G0764 |