Basic Information
Locus ID:
MSTRG.4576_chr03_-
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 12999606 | 13003250 | - | MSTRG.4576_chr03_- |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 55,716.92 Da | 45.99 | 95.71 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 48 | 83 | 3.6E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 203 | 376 | 9.42E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 46 | 96 | 1.1E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 37 | 146 | 3.9E-6 | - |
| SMART | SM00256 | fbox_2 | 52 | 92 | 7.0E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 46 | 96 | 11.034144 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 0 |
| RefSeq | XP_050232884.1 | putative F-box protein At1g49610 [Mercurialis annua] | 0 |
| Q9LX56 | F-box protein At3g59150 OS=Arabidopsis thaliana OX=3702 GN=At3g59150 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J4RY47 | F-box domain-containing protein OS=Castanea mollissima OX=60419 GN=CMV_004558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55900.1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1166 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.38 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24763, nbisL1-mrna-24764 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.260 |
| Salicaceae | Populus euphratica | 1 | populus_peu04600 |
| Tamaricaceae | Reaumuria soongarica | 14 | MSTRG.13023_chr07_+, MSTRG.13852_chr08_-, MSTRG.4576_chr03_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G1245, TC08G0764 |