Basic Information
Locus ID:
Lb8G36594
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 105210063 | 105234353 | - | Lb8G36594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 41,834.92 Da | 55.09 | 56.68 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 321 | 361 | 5.61642E-27 | - |
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 321 | 361 | 5.61642E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 320 | 366 | 4.1E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 320 | 366 | 4.1E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 367 | 1.94E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 367 | 1.94E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 372 | 9.9E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 372 | 9.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 322 | 360 | 2.2E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 322 | 360 | 2.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 361 | 11.781134 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 361 | 11.781134 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 62 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021839125.1 | probable E3 ubiquitin-protein ligase LUL3 [Spinacia oleracea] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P6QXD7 | RING-type E3 ubiquitin transferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0418321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology