Basic Information
Locus ID:
Lb8G36405
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ubiquitin-conjugating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 75289207 | 75292285 | + | Lb8G36405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 13,872.43 Da | 70.79 | 67.92 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 10 | 118 | 2.7098E-30 | IPR000608 |
| CDD | cd00195 | UBCc | 10 | 118 | 2.7098E-30 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 81 | 117 | 1.2E-6 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 81 | 117 | 1.2E-6 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 66 | 3.5E-13 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 66 | 3.5E-13 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 121 | 9.13E-30 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 3 | 121 | 9.13E-30 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 70 | 6.2E-21 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 74 | 124 | 3.8E-11 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 70 | 6.2E-21 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 74 | 124 | 3.8E-11 | IPR016135 |
| SMART | SM00212 | ubc_7 | 9 | 123 | 1.2E-17 | - |
| SMART | SM00212 | ubc_7 | 9 | 123 | 1.2E-17 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 6 | 125 | 19.697952 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 6 | 125 | 19.697952 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_021890519.1 | ubiquitin-conjugating enzyme E2 1-like isoform X2 [Carica papaya] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N0TMT5 | UBC core domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16942 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026529 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13306, Sbi_jg52542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9296 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34475, Sgl39889 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003605, gene:ENSEOMG00000005805 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0017550, CQ.Regalona.r1.6BG0018710 |
| Arecaceae | Cocos nucifera | 1 | contig69538645G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704264 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0299s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g31230 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36405 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.951, evm.TU.LG15.865 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g20020, gene.Posoc03g27170 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-804 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14932 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2421 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.538 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001622 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6175 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1862 |