Basic Information
Locus ID:
Lb8G36353
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the cysteine synthase cystathionine beta- synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 72273185 | 72288704 | - | Lb8G36353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 81,632.30 Da | 28.73 | 84.52 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01561 | CBS_like | 464 | 707 | 1.52267E-98 | - |
| CDD | cd01561 | CBS_like | 464 | 707 | 1.52267E-98 | - |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 159 | 211 | 2.2E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 341 | 360 | 0.015 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 217 | 245 | 1.8E-4 | IPR002885 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 460 | 715 | 7.8E-49 | IPR001926 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 460 | 715 | 7.8E-49 | IPR001926 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 269 | 314 | 3.7E-5 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 217 | 245 | 1.8E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 341 | 360 | 0.015 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 159 | 211 | 2.2E-10 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 269 | 314 | 3.7E-5 | IPR002885 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 455 | 715 | 1.44E-73 | IPR036052 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 455 | 715 | 1.44E-73 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 461 | 715 | 1.5E-96 | IPR036052 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 64 | 248 | 4.4E-30 | IPR011990 |
| Gene3D | G3DSA:3.40.50.1100 | - | 461 | 715 | 1.5E-96 | IPR036052 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 64 | 248 | 4.4E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 249 | 460 | 2.8E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 249 | 460 | 2.8E-24 | IPR011990 |
| Gene3D | G3DSA:3.40.50.1100 | - | 497 | 599 | 1.5E-96 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 497 | 599 | 1.5E-96 | IPR036052 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 270 | 302 | 8.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 164 | 197 | 1.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 234 | 267 | 1.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 199 | 232 | 1.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 270 | 302 | 8.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 164 | 197 | 1.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 234 | 267 | 1.2E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 199 | 232 | 1.6E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | 11.202506 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 197 | 231 | 11.202506 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | 10.709248 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | 10.577712 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | 10.314641 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 162 | 196 | 10.709248 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 267 | 301 | 10.577712 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 232 | 266 | 10.314641 | IPR002885 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 485 | 503 | - | IPR001216 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 485 | 503 | - | IPR001216 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 423 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14880.1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1. Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Lines carrying semi-dominant mutations exhibit early senescence. | 0 |
| RefSeq | XP_034705939.1 | cysteine synthase-like isoform X1 [Vitis riparia] | 0 |
| Q9XEA8 | Cysteine synthase OS=Oryza sativa subsp. japonica OX=39947 GN=RCS3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J6FQB7 | Cysteine synthase OS=Cannabis sativa OX=3483 GN=G4B88_028812 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology