halophFGD

Basic Information

Locus ID: Lb8G36144

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Zinc finger protein VAR3

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr08	57540271	57544465	-	Lb8G36144

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.40	59,850.75 Da	45.31	61.65	-0.85

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00641	Zn-finger in Ran binding protein and others	335	359	1.0E-4	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	293	314	8.5E-6	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	370	396	3.9E-4	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	370	396	3.9E-4	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	335	359	1.0E-4	IPR001876
Pfam	PF00641	Zn-finger in Ran binding protein and others	293	314	8.5E-6	IPR001876
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	330	363	9.58E-6	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	284	316	1.1E-5	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	284	316	1.1E-5	IPR036443
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	330	363	9.58E-6	IPR036443
Gene3D	G3DSA:4.10.1060.10	-	328	364	3.8E-10	-
Gene3D	G3DSA:4.10.1060.10	-	365	398	4.9E-6	-
Gene3D	G3DSA:4.10.1060.10	-	365	398	4.9E-6	-
Gene3D	G3DSA:4.10.1060.10	-	284	316	4.2E-11	-
Gene3D	G3DSA:4.10.1060.10	-	328	364	3.8E-10	-
Gene3D	G3DSA:4.10.1060.10	-	284	316	4.2E-11	-
SMART	SM00547	zf_4	370	394	0.067	IPR001876
SMART	SM00547	zf_4	337	361	1.1E-4	IPR001876
SMART	SM00547	zf_4	293	317	2.3E-5	IPR001876
SMART	SM00547	zf_4	370	394	0.067	IPR001876
SMART	SM00547	zf_4	293	317	2.3E-5	IPR001876
SMART	SM00547	zf_4	337	361	1.1E-4	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	368	397	9.145193	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	368	397	9.145193	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	291	315	9.653342	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	335	364	9.867894	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	291	315	9.653342	IPR001876
ProSiteProfiles	PS50199	Zinc finger RanBP2 type profile.	335	364	9.867894	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	339	358	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	372	391	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	339	358	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	295	314	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	372	391	-	IPR001876
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	295	314	-	IPR001876
MobiDBLite	mobidb-lite	consensus disorder prediction	68	89	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	68	89	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G70650.1	Ran BP2/NZF zinc finger-like superfamily protein.
RefSeq	XP_030956804.1	uncharacterized protein LOC115979006 [Quercus lobata]
Swiss-Prot	Q8S9K3	Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2
TrEMBL	A0A7N2R1B7	Zinc finger protein VAR3, chloroplastic OS=Quercus lobata OX=97700 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg18508, jg26572, jg7362
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10467, gene_19906
Amaranthaceae	Atriplex hortensis	2	Ah002107, Ah005787
Amaranthaceae	Beta vulgaris	2	BVRB_4g081330, BVRB_5g110990
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17078, Sbi_jg32026, Sbi_jg57319, Sbi_jg61629
Amaranthaceae	Salicornia europaea	1	Seu_jg25047
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008397, GOSA_00019259
Amaranthaceae	Suaeda glauca	4	Sgl24535, Sgl29700, Sgl53851, Sgl59114
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005102, gene:ENSEOMG00000023265 ... gene:ENSEOMG00000026795, gene:ENSEOMG00000028965, gene:ENSEOMG00000039962
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0008530, CQ.Regalona.r1.5AG0015630 ... CQ.Regalona.r1.5BG0016800
Anacardiaceae	Pistacia vera	4	pistato.v30084090, pistato.v30127270, pistato.v30149750 ... pistato.v30218140
Apiaceae	Apium graveolens	3	Ag3G01992, Ag7G01610, Ag8G01876
Arecaceae	Cocos nucifera	3	COCNU_03G009990, COCNU_03G010040, COCNU_12G001970
Arecaceae	Phoenix dactylifera	3	gene-LOC103697650, gene-LOC103697653, gene-LOC103724379
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.969.V1.1, AsparagusV1_03.1559.V1.1 ... AsparagusV1_08.3105.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G27548, Ftri15G22692, Ftri8G01563
Brassicaceae	Arabidopsis thaliana	3	AT1G48570.1, AT1G55040.1, AT1G70650.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10011523m.g.v1.0, Thhalv10019608m.g.v1.0 ... Thhalv10023272m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g35510.v2.2, SpUn0004_0260.v2.2
Brassicaceae	Brassica nigra	3	BniB03g048490.2N, BniB04g018590.2N, BniB04g062250.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2825, Ceq06G1198, Ceq09G0846
Casuarinaceae	Casuarina glauca	3	Cgl03G2979, Cgl06G1252, Cgl09G0915
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g04750, gene.Cymno11g03380, gene.Cymno13g02570
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g27060, gene.Thate05g18990, gene.Thate05g23570
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7777, nbisL1-mrna-7778
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1253, evm.TU.LG03.2444, evm.TU.LG10.66
Plantaginaceae	Plantago ovata	3	Pov_00007269, Pov_00017210, Pov_00018589
Plumbaginaceae	Limonium bicolor	3	Lb3G16589, Lb6G29930, Lb8G36144
Poaceae	Echinochloa crus-galli	10	AH01.845, AH01.870, AH01.871, AH03.887, BH01.1013, BH01.988 ... BH03.1014, CH01.1034, CH01.1062, CH03.1175
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219350, gene-QOZ80_3BG0264620 ... gene-QOZ80_7AG0563990, gene-QOZ80_7BG0597280
Poaceae	Lolium multiflorum	3	gene-QYE76_026028, gene-QYE76_062435, gene-QYE76_062848
Poaceae	Oryza coarctata	7	Oco05G021460, Oco05G021700, Oco06G022260, Oco06G022470 ... Oco13G006110, Oco14G006580, Oco18G000710
Poaceae	Oryza sativa	3	LOC_Os03g50120.1, LOC_Os03g50430.1, LOC_Os07g22024.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G106500, gene-BS78_01G108600 ... gene-BS78_02G081200
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105035, Pt_Chr0206277, Pt_Chr0206292, Pt_Chr0502644
Poaceae	Sporobolus alterniflorus	9	Chr01G007230, Chr04G026810, Chr04G027010, Chr07G025820 ... Chr12G030250, Chr19G015250, Chr24G006040, Chr27G000270, Chr28G005510
Poaceae	Thinopyrum elongatum	4	Tel4E01G080000, Tel4E01G083000, Tel6E01G639600 ... Tel7E01G647100
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG041760, gene_TRIDC4AG042040 ... gene_TRIDC4BG006930, gene_TRIDC4BG007290, gene_TRIDC6AG053860
Poaceae	Triticum aestivum	10	TraesCS4A02G267600.1, TraesCS4A02G269900.1 ... TraesCS4B02G044200.1, TraesCS4B02G046800.1, TraesCS4D02G041700.1, TraesCS4D02G046600.1, TraesCS6A02G359500.1, TraesCS6B02G392400.1, TraesCS6D02G103100.1, TraesCS6D02G342400.1
Poaceae	Zea mays	3	Zm00001eb094690_P002, Zm00001eb216320_P001 ... Zm00001eb216480_P002
Poaceae	Zoysia japonica	4	nbis-gene-14801, nbis-gene-14802, nbis-gene-15920 ... nbis-gene-38866
Poaceae	Zoysia macrostachya	3	Zma_g2955, Zma_g6296, Zma_g659
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1024, evm.TU.LG08.659, evm.TU.LG22.1255 ... evm.TU.LG23.41
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g10140, gene.Posoc03g13770, gene.Posoc04g06360 ... gene.Posoc10g05280
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.60387.1, evm.TU.60388.1 ... evm.TU.Scaffold_11_RagTag.740, evm.TU.Scaffold_17_RagTag.771, evm.TU.Scaffold_2_RagTag.2048
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14411, nbisL1-mrna-23477, nbisL1-mrna-2757 ... nbisL1-mrna-2820
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1125, nbisL1-mrna-11782, nbisL1-mrna-12587
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12351, nbisL1-mrna-13689, nbisL1-mrna-20045
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.62, evm.TU.utg000013l.424 ... evm.TU.utg000061l.25
Rhizophoraceae	Kandelia obovata	3	Maker00004422, Maker00005159, Maker00009092
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10819, nbisL1-mrna-12978, nbisL1-mrna-927
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14268, nbisL1-mrna-16161
Salicaceae	Populus euphratica	3	populus_peu13412, populus_peu28255, populus_peu29707
Solanaceae	Lycium barbarum	2	gene-LOC132609147, gene-LOC132633197
Solanaceae	Solanum chilense	3	SOLCI000273200, SOLCI000665200, SOLCI006610100
Solanaceae	Solanum pennellii	2	gene-LOC107014296, gene-LOC107026902
Tamaricaceae	Reaumuria soongarica	3	gene_10199, gene_12408, gene_8930
Tamaricaceae	Tamarix chinensis	3	TC04G0097, TC10G2609, TC12G2018
Zosteraceae	Zostera marina	3	Zosma03g20430.v3.1, Zosma03g23750.v3.1, Zosma06g07010.v3.1