Basic Information
Locus ID:
Lb8G36058
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Serine threonine-protein kinase endoribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 50217642 | 50222928 | - | Lb8G36058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 97,602.02 Da | 40.89 | 88.19 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10422 | RNase_Ire1 | 725 | 854 | 7.36232E-65 | - |
| CDD | cd10422 | RNase_Ire1 | 725 | 854 | 7.36232E-65 | - |
| Pfam | PF00069 | Protein kinase domain | 440 | 721 | 1.6E-39 | IPR000719 |
| Pfam | PF06479 | Ribonuclease 2-5A | 727 | 854 | 5.6E-46 | IPR010513 |
| Pfam | PF00069 | Protein kinase domain | 440 | 721 | 1.6E-39 | IPR000719 |
| Pfam | PF06479 | Ribonuclease 2-5A | 727 | 854 | 5.6E-46 | IPR010513 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 435 | 731 | 9.45E-58 | IPR011009 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 65 | 188 | 1.02E-5 | IPR011047 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 435 | 731 | 9.45E-58 | IPR011009 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 65 | 188 | 1.02E-5 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 47 | 234 | 2.8E-5 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 554 | 723 | 1.7E-43 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 554 | 723 | 1.7E-43 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 47 | 234 | 2.8E-5 | IPR015943 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 432 | 512 | 1.7E-28 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 432 | 512 | 1.7E-28 | - |
| Gene3D | G3DSA:1.20.1440.180 | KEN domain | 724 | 860 | 4.2E-50 | IPR038357 |
| Gene3D | G3DSA:1.20.1440.180 | KEN domain | 724 | 860 | 4.2E-50 | IPR038357 |
| SMART | SM00220 | serkin_6 | 440 | 721 | 4.1E-39 | IPR000719 |
| SMART | SM00580 | PGNneu | 787 | 841 | 7.9E-22 | - |
| SMART | SM00220 | serkin_6 | 440 | 721 | 4.1E-39 | IPR000719 |
| SMART | SM00580 | PGNneu | 787 | 841 | 7.9E-22 | - |
| ProSiteProfiles | PS51392 | KEN domain profile. | 724 | 856 | 40.313171 | IPR010513 |
| ProSiteProfiles | PS51392 | KEN domain profile. | 724 | 856 | 40.313171 | IPR010513 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 721 | 36.513081 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 721 | 36.513081 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 583 | 595 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 583 | 595 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17520.1 | Endoribonuclease/protein kinase IRE1-like. Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants. | 0 |
| RefSeq | XP_021851496.1 | serine/threonine-protein kinase/endoribonuclease IRE1a [Spinacia oleracea] | 0 |
| Q9C5S2 | Serine/threonine-protein kinase/endoribonuclease IRE1a OS=Arabidopsis thaliana OX=3702 GN=IRE1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RM60 | Non-specific serine/threonine protein kinase OS=Spinacia oleracea OX=3562 GN=SOVF_056900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11487, jg22557, jg30940 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13359, gene_8630 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027281, Ah035821 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g014280, BVRB_6g135950 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12652, Sbi_jg39818, Sbi_jg53282, Sbi_jg55159 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14508, Seu_jg8637 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00010378, GOSA_00010381, GOSA_00013057 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12425, Sgl17692, Sgl33609, Sgl38915 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002717, gene:ENSEOMG00000003675 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0023440, CQ.Regalona.r1.1BG0000820 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048150, pistato.v30212310 |
| Apiaceae | Apium graveolens | 2 | Ag2G03001, Ag7G01447 |
| Arecaceae | Cocos nucifera | 1 | scaffold004645G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704928 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.427.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G07527, Ftri17G30686 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17520.1, AT3G11870.1, AT5G24360.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003683m.g.v1.0, Thhalv10022558m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g22960.v2.2, Sp3g30880.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g013840.2N, BniB02g077260.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0613, Ceq01G0615, Ceq03G1146, Ceq06G0033 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G0703, Cgl01G0706, Cgl01G0707, Cgl06G0034 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08360 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0170s00010.v1.0, Dusal.1424s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g17200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10413, nbisL1-mrna-6926 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2891, evm.TU.LG06.53 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023134, Pov_00038732 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12367, Lb8G36058 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2947, BH03.3120, CH03.3309 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0566520, gene-QOZ80_7BG0598010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041428 |
| Poaceae | Oryza coarctata | 2 | Oco13G006960, Oco14G007550 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g28820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G274400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304093 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006350, Chr24G005400, Chr27G010510, Chr28G004620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G678000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG055930, gene_TRIDC6BG065420 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G374700.1, TraesCS6B02G412400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb104810_P001, Zm00001eb320100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1096 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5114, Zma_g6401 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.310, evm.TU.LG04.445, evm.TU.LG18.667 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.14 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-135, nbisL1-mrna-16936, nbisL1-mrna-16937 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5898 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5828 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1205 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6614 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2499 |
| Salicaceae | Populus euphratica | 3 | populus_peu15503, populus_peu23244, populus_peu33138 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621729, gene-LOC132628235 |
| Solanaceae | Solanum chilense | 2 | SOLCI003210600, SOLCI004549600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010278, gene-LOC107018272 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_1890, gene_2318 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0855, TC04G2414 |
| Zosteraceae | Zostera marina | 1 | Zosma03g21750.v3.1 |