Basic Information
Locus ID:
Lb8G35804
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
wall-associated receptor kinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 28268882 | 28274474 | - | Lb8G35804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 144,646.98 Da | 41.16 | 82.98 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 815 | 857 | 5.6299E-18 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 815 | 857 | 5.6299E-18 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 87 | 142 | 4.9E-13 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 161 | 256 | 3.6E-11 | IPR001584 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 483 | 727 | 8.8E-78 | IPR013103 |
| Pfam | PF00069 | Protein kinase domain | 939 | 1208 | 3.5E-46 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 939 | 1208 | 3.5E-46 | IPR000719 |
| Pfam | PF13976 | GAG-pre-integrase domain | 87 | 142 | 4.9E-13 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 161 | 256 | 3.6E-11 | IPR001584 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 483 | 727 | 8.8E-78 | IPR013103 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 158 | 313 | 3.79E-37 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 486 | 862 | 1.02E-15 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 158 | 313 | 3.79E-37 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 486 | 862 | 1.02E-15 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 922 | 1211 | 8.06E-72 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 922 | 1211 | 8.06E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 900 | 1015 | 3.1E-27 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 150 | 333 | 6.4E-38 | IPR036397 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1016 | 1230 | 1.1E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 900 | 1015 | 3.1E-27 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 150 | 333 | 6.4E-38 | IPR036397 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1016 | 1230 | 1.1E-51 | - |
| SMART | SM00220 | serkin_6 | 939 | 1221 | 1.2E-38 | IPR000719 |
| SMART | SM00220 | serkin_6 | 939 | 1221 | 1.2E-38 | IPR000719 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 149 | 319 | 24.19838 | IPR001584 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 939 | 1215 | 37.205647 | IPR000719 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 149 | 319 | 24.19838 | IPR001584 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 939 | 1215 | 37.205647 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 945 | 968 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 945 | 968 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1060 | 1072 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1060 | 1072 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 471 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23450.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_035836751.1 | uncharacterized protein LOC110894446 [Helianthus annuus] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A151UBW1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_021067 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg11930, jg19699, jg19707, jg22822, jg30633, jg40098, jg6278 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24198 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah026658, Ah026723, Ah026725 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51555, Sbi_jg5828 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13589 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013480 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34700, Sgl40111 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000003147, gene:ENSEOMG00000003976 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0018460, CQ.Regalona.r1.6AG0018940 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30045940, pistato.v30207160 |
| Apiaceae | Apium graveolens | 3 | Ag10G02267, Ag2G00309, AgUnG00691 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G017870, COCNU_06G017880, scaffold016103G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707476, gene-LOC103709170 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.833.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G31129, Ftri17G31046, Ftri18G26696 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G23450.2, AT4G00955.1, AT5G66790.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000066m.g.v1.0, Thhalv10003840m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g29890.v2.2, Sp4g02450.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g020340.2N, BniB02g020460.2N, BniB06g015260.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1668, Ceq08G1667 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1792, Cgl08G1707 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g15070 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g13410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4396, nbisL1-mrna-7065 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG02.2233, evm.TU.LG03.1058, evm.TU.LG03.2584 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002402, Pov_00024027, Pov_00029413 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb1G05961, Lb7G35130, Lb7G35139, Lb8G35804, Lb8G35909 ... |
| Poaceae | Echinochloa crus-galli | 8 | AH01.4464, AH05.3932, BH05.4015, BH05.4016, CH01.4117 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0239510, gene-QOZ80_3BG0288510 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0394990.1, HORVU.MOREX.r3.5HG0436960.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_000622, gene-QYE76_000904, gene-QYE76_017571 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G006970, Oco06G007200, Oco23G009670, Oco24G009370 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g12470.1, LOC_Os12g40419.1, LOC_Os12g41570.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G432200, gene-BS78_08G129100 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101827, Pt_Chr0101861, Pt_Chr0704225 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G028330, Chr04G000950, Chr04G018310, Chr06G018990 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel4E01G410000, Tel5E01G114000, Tel5E01G131900 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG009020, gene_TRIDC4BG041980 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G062000.1, TraesCS4B02G238700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb009320_P003, Zm00001eb030730_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2419, nbis-gene-30479 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1739, Zma_g26063 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.239, evm.TU.LG05.708, evm.TU.LG25.1074 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28190 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_3_RagTag.302, evm.TU.Scaffold_3_RagTag.303 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17191, nbisL1-mrna-19105 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-16522, nbisL1-mrna-3132, nbisL1-mrna-3807 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11848, nbisL1-mrna-21872 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.529, evm.TU.utg000011l.1185 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00007115, Maker00012128, Maker00012659 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15550, nbisL1-mrna-5836, nbisL1-mrna-6465 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12458, nbisL1-mrna-2277, nbisL1-mrna-3155 |
| Salicaceae | Populus euphratica | 3 | populus_peu14273, populus_peu23485, populus_peu31940 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621221, gene-LOC132627940 |
| Solanaceae | Solanum chilense | 2 | SOLCI003384700, SOLCI003581400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011525, gene-LOC107017918 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8783_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G2142, TC09G1196, TC11G0513 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01610.v3.1 |