Basic Information
Locus ID:
Lb8G35696
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 15850312 | 15859665 | - | Lb8G35696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 136,093.05 Da | 49.38 | 75.49 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 660 | 792 | 2.35155E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 457 | 659 | 1.24998E-104 | - |
| CDD | cd17920 | DEXHc_RecQ | 457 | 659 | 1.24998E-104 | - |
| CDD | cd18794 | SF2_C_RecQ | 660 | 792 | 2.35155E-71 | - |
| Pfam | PF16124 | RecQ zinc-binding | 794 | 873 | 1.4E-14 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1045 | 1109 | 2.8E-11 | IPR002121 |
| Pfam | PF09382 | RQC domain | 882 | 996 | 2.3E-23 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 677 | 782 | 4.7E-18 | IPR001650 |
| Pfam | PF09382 | RQC domain | 882 | 996 | 2.3E-23 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 471 | 639 | 2.2E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1045 | 1109 | 2.8E-11 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 794 | 873 | 1.4E-14 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 677 | 782 | 4.7E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 471 | 639 | 2.2E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 658 | 927 | 6.14E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 444 | 801 | 3.11E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1045 | 1115 | 9.59E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 658 | 927 | 6.14E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 444 | 801 | 3.11E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1045 | 1115 | 9.59E-13 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 660 | 877 | 2.9E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 433 | 659 | 1.5E-92 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 660 | 877 | 2.9E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1033 | 1124 | 1.2E-18 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 881 | 991 | 4.0E-21 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 433 | 659 | 1.5E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1033 | 1124 | 1.2E-18 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 881 | 991 | 4.0E-21 | IPR036388 |
| SMART | SM00487 | ultradead3 | 465 | 668 | 3.9E-30 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1040 | 1119 | 0.0097 | IPR002121 |
| SMART | SM00956 | RQC_2 | 883 | 994 | 8.9E-29 | IPR018982 |
| SMART | SM00490 | helicmild6 | 702 | 783 | 1.8E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 883 | 994 | 8.9E-29 | IPR018982 |
| SMART | SM00490 | helicmild6 | 702 | 783 | 1.8E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 1040 | 1119 | 0.0097 | IPR002121 |
| SMART | SM00487 | ultradead3 | 465 | 668 | 3.9E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 461 | 934 | 6.7E-166 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 461 | 934 | 6.7E-166 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 692 | 734 | 10.019726 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1036 | 1119 | 15.481564 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 677 | 836 | 20.079334 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 477 | 652 | 22.165922 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 477 | 652 | 22.165922 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 677 | 836 | 20.079334 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1036 | 1119 | 15.481564 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 692 | 734 | 10.019726 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 591 | 600 | - | IPR002464 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 591 | 600 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1175 | - | - |
| Coils | Coil | Coil | 325 | 345 | - | - |
| Coils | Coil | Coil | 325 | 345 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_042982000.1 | ATP-dependent DNA helicase Q-like 4A [Carya illinoinensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7ATW1 | DNA helicase OS=Davidia involucrata OX=16924 GN=Din_028302 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology