Basic Information
Locus ID:
Lb7G35028
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 195331207 | 195337003 | + | Lb7G35028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 91,630.75 Da | 45.73 | 86.45 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 546 | 679 | 6.74124E-24 | - |
| CDD | cd00009 | AAA | 546 | 679 | 6.74124E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 548 | 678 | 5.3E-38 | IPR003959 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 548 | 678 | 5.3E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 700 | 736 | 2.3E-10 | IPR041569 |
| Pfam | PF17862 | AAA+ lid domain | 700 | 736 | 2.3E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 507 | 737 | 2.45E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 507 | 737 | 2.45E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 788 | 2.7E-94 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 788 | 2.7E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 680 | 782 | 2.7E-94 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 680 | 782 | 2.7E-94 | - |
| SMART | SM00382 | AAA_5 | 544 | 681 | 1.3E-20 | IPR003593 |
| SMART | SM00382 | AAA_5 | 544 | 681 | 1.3E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 651 | 670 | - | IPR003960 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 651 | 670 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 763 | - | - |
| Coils | Coil | Coil | 731 | 754 | - | - |
| Coils | Coil | Coil | 731 | 754 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_018847323.2 | nuclear valosin-containing protein-like [Juglans regia] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4GTV6 | nuclear valosin-containing protein-like OS=Juglans regia OX=51240 GN=LOC109010848 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology