Basic Information
Locus ID:
Lb7G34609
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 144603272 | 144612075 | + | Lb7G34609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 68,135.34 Da | 50.32 | 88.66 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF19160 | SPARK | 38 | 181 | 2.7E-26 | IPR043891 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 315 | 557 | 4.1E-29 | IPR001245 |
| Pfam | PF19160 | SPARK | 38 | 181 | 2.7E-26 | IPR043891 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 315 | 557 | 4.1E-29 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 575 | 2.13E-54 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 575 | 2.13E-54 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 562 | 3.2E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 308 | 371 | 2.1E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 562 | 3.2E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 308 | 371 | 2.1E-8 | - |
| SMART | SM00220 | serkin_6 | 271 | 533 | 5.5E-11 | IPR000719 |
| SMART | SM00220 | serkin_6 | 271 | 533 | 5.5E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 243 | 561 | 22.746565 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 243 | 561 | 22.746565 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 408 | 420 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 408 | 420 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G48010.1 | receptor-like kinase in in flowers 3. receptor-like serine/threonine kinase (RKF3) | 0 |
| RefSeq | XP_030486262.1 | probable LRR receptor-like serine/threonine-protein kinase RKF3 [Cannabis sativa] | 0 |
| P93050 | Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana OX=3702 GN=RKF3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6YSX1 | Putative LRR receptor-like serine/threonine-protein kinase RKF3 OS=Davidia involucrata OX=16924 GN=Din_004421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35260 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6253, gene_6254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005097 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17764, Sbi_jg62422 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg999 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007232 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23933, Sgl29112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009565, gene:ENSEOMG00000027373 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002420, CQ.Regalona.r1.4BG0002500 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011390 |
| Apiaceae | Apium graveolens | 6 | Ag11G04050, Ag2G02425, AgUnG00541, AgUnG00542, AgUnG00543 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G002830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707538 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.2017.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G25519 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G48010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016382m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g022920.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0160, Ceq06G2147, Ceq06G2300 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G0151, Cgl06G2261, Cgl06G2417, Cgl06G2418 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.234 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024798 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24546, Lb7G34609 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.1987 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0017500, gene-QOZ80_1BG0066840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0348910.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043010 |
| Poaceae | Oryza coarctata | 2 | Oco01G010600, Oco02G011340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g28730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K057300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301988, Pt_Chr0302012 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G020450, Chr19G014270, Chr27G000900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G175600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032740, gene_TRIDC4BG017090 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G205800.1.cds1, TraesCS4B02G109400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21608 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10378, Zma_g10379 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.754, evm.TU.LG03.757, evm.TU.LG12.972 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.880 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21343 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19922 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18427, nbisL1-mrna-7302 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17323 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5174 |
| Salicaceae | Populus euphratica | 4 | populus_peu13464, populus_peu15803, populus_peu27180 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609687, gene-LOC132626815 |
| Solanaceae | Solanum chilense | 1 | SOLCI007222100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029409 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.752_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0309 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20420.v3.1 |