Basic Information
Locus ID:
Lb7G34421
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SAPK4
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 131843156 | 131844835 | - | Lb7G34421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 14,525.52 Da | 52.11 | 93.00 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 23 | 88 | 1.8E-12 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 23 | 88 | 1.8E-12 | IPR000743 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 73 | 119 | 1.25E-5 | IPR011009 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 22 | 87 | 4.19E-14 | IPR011050 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 73 | 119 | 1.25E-5 | IPR011009 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 22 | 87 | 4.19E-14 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 7 | 126 | 4.7E-16 | IPR012334 |
| Gene3D | G3DSA:2.160.20.10 | - | 7 | 126 | 4.7E-16 | IPR012334 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07970.1 | Pectin lyase-like superfamily protein. Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. | 0 |
| RefSeq | XP_030474289.1 | polygalacturonase-like [Syzygium oleosum] | 0 |
| Q9SFB7 | Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8QMH5 | polygalacturonase-like OS=Rhodamnia argentea OX=178133 GN=LOC115753082 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 5 | Sgl02968, Sgl04141, Sgl08058, Sgl09200, Sgl53193 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064480 |
| Arecaceae | Cocos nucifera | 1 | scaffold027032G000010 |
| Brassicaceae | Brassica nigra | 1 | BniB03g057660.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17300 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9441 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08624, Lb2G13984, Lb7G34421 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.3777 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0278430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0414820.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11250, nbis-gene-12098 |
| Solanaceae | Solanum chilense | 1 | SOLCI006160200 |