Basic Information
Locus ID:
Lb7G34321
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 127742037 | 127743810 | - | Lb7G34321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 42,012.40 Da | 49.46 | 77.39 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 324 | 363 | 7.5E-8 | IPR002893 |
| Pfam | PF01753 | MYND finger | 324 | 363 | 7.5E-8 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 152 | 231 | 2.22E-5 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 318 | 366 | 1.52E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 72 | 134 | 3.49E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 318 | 366 | 1.52E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 72 | 134 | 3.49E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 152 | 231 | 2.22E-5 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 314 | 367 | 1.0E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 245 | 5.7E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 245 | 5.7E-6 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 314 | 367 | 1.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 321 | 363 | 11.135994 | IPR002893 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 321 | 363 | 11.135994 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_002514915.1 | F-box protein At1g67340 [Ricinus communis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L254 | MYND-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology