Basic Information
Locus ID:
Lb7G34240
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 122814982 | 122817900 | + | Lb7G34240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 23,706.36 Da | 58.63 | 76.31 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 46 | 152 | 1.1E-20 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 46 | 152 | 1.1E-20 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 10 | 163 | 9.42E-39 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 10 | 163 | 9.42E-39 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 2 | 182 | 2.2E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 2 | 182 | 2.2E-34 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 170 | 18.602253 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 170 | 18.602253 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021893933.1 | ubiquitin carboxyl-terminal hydrolase 12 [Carica papaya] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9EBF1 | USP domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||