Basic Information
Locus ID:
Lb7G34158
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING FYVE PHD-type zinc finger family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 119490918 | 119500862 | - | Lb7G34158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 37,789.36 Da | 61.84 | 67.33 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00471 | Ribosomal protein L33 | 283 | 327 | 2.6E-11 | IPR001705 |
| Pfam | PF00628 | PHD-finger | 121 | 166 | 7.3E-14 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 121 | 166 | 7.3E-14 | IPR019787 |
| Pfam | PF00471 | Ribosomal protein L33 | 283 | 327 | 2.6E-11 | IPR001705 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 60 | 121 | 2.44E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 120 | 169 | 2.21E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 120 | 169 | 2.21E-14 | IPR011011 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 275 | 327 | 1.83E-14 | IPR011332 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 275 | 327 | 1.83E-14 | IPR011332 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 60 | 121 | 2.44E-6 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 120 | 3.5E-5 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 167 | 4.1E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 120 | 3.5E-5 | IPR013083 |
| Gene3D | G3DSA:2.20.28.120 | Ribosomal protein L33 | 273 | 329 | 3.1E-23 | IPR038584 |
| Gene3D | G3DSA:2.20.28.120 | Ribosomal protein L33 | 273 | 329 | 3.1E-23 | IPR038584 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 167 | 4.1E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 71 | 120 | 1.2E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 71 | 120 | 1.2E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 123 | 166 | 7.5E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 123 | 166 | 7.5E-10 | IPR001965 |
| TIGRFAM | TIGR01023 | rpmG_bact: ribosomal protein bL33 | 275 | 329 | 3.0E-19 | IPR001705 |
| TIGRFAM | TIGR01023 | rpmG_bact: ribosomal protein bL33 | 275 | 329 | 3.0E-19 | IPR001705 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 118 | 168 | 10.1842 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 69 | 122 | 9.0895 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 118 | 168 | 10.1842 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 69 | 122 | 9.0895 | IPR019787 |
| ProSitePatterns | PS00582 | Ribosomal protein L33 signature. | 295 | 314 | - | IPR018264 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 72 | 119 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 116 | 165 | - | IPR019786 |
| ProSitePatterns | PS00582 | Ribosomal protein L33 signature. | 295 | 314 | - | IPR018264 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 72 | 119 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 116 | 165 | - | IPR019786 |
| Hamap | MF_00294 | 50S ribosomal protein L33 [rpmG]. | 274 | 327 | 12.757834 | IPR001705 |
| Hamap | MF_00294 | 50S ribosomal protein L33 [rpmG]. | 274 | 327 | 12.757834 | IPR001705 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77250.1 | RING/FYVE/PHD-type zinc finger family protein. | 0 |
| RefSeq | XP_021760908.1 | PHD finger protein EHD3-like [Chenopodium quinoa] | 0 |
| Q2W1A2 | Large ribosomal subunit protein bL33 OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=rpmG PE=3 SV=1 | 0 | |
| TrEMBL | A0A7J8Q3I7 | PHD-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_012665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12478 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009630, BVRB_2g033650 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2898 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0012360, CQ.Regalona.r1.1BG0008740 ... |
| Apiaceae | Apium graveolens | 1 | Ag5G02453 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009880 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G08483, Ftri15G04256, Ftri9G27875 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G06320.1, AT5G18790.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015229m.g.v1.0, Thhalv10022246m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g05230.v2.2, Sp6g25600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g043950.2N, BniB05g045020.2N, BniB08g009540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1239 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1327 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0393s00014.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4168 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1562 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34158 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g37884.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G200200, gene-BS78_10G075900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602707 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G017060, Chr12G004300, Chr12G004320, Chr19G003160 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G571500, Tel3E01G490700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG049510, gene_TRIDC1BG056240 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G333400.1.cds1, TraesCS1B02G346800.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49981 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26866, Zma_g28575, Zma_g3584 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g32080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.567 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16033, nbisL1-mrna-21820 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2816 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-549, nbisL1-mrna-6250, nbisL1-mrna-7307 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.285, evm.TU.utg000011l.392 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007939, Maker00012684 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19500, nbisL1-mrna-23393 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12764, nbisL1-mrna-3393 |
| Salicaceae | Populus euphratica | 1 | populus_peu00559 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615651, gene-LOC132626872 |
| Solanaceae | Solanum chilense | 1 | SOLCI006205000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016225, gene-LOC107018215 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_15760, gene_2036, gene_9393 |
| Zosteraceae | Zostera marina | 1 | Zosma05g10940.v3.1 |