Basic Information
Locus ID:
Lb7G33830
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 106960370 | 106964196 | - | Lb7G33830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 40,785.25 Da | 51.46 | 85.67 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 206 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 297 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 206 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 297 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 312 | 3.97E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 312 | 3.97E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 348 | 1.1E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 348 | 1.1E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 168 | 206 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 297 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 165 | 0.92 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 206 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 297 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 120 | 165 | 0.92 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 300 | 9.045603 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 300 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 300 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 300 | 9.045603 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_044504188.1 | WD repeat-containing protein LWD1 [Mangifera indica] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HDC7 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020246 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology