Basic Information
Locus ID:
Lb7G33735
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 102363248 | 102365663 | - | Lb7G33735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 26,374.66 Da | 59.07 | 81.58 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 49 | 155 | 4.5E-22 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 49 | 155 | 4.5E-22 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 19 | 166 | 9.42E-39 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 19 | 166 | 9.42E-39 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 15 | 205 | 2.9E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 15 | 205 | 2.9E-35 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 183 | 19.54641 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 183 | 19.54641 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 109 | 126 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 109 | 126 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021893933.1 | ubiquitin carboxyl-terminal hydrolase 12 [Carica papaya] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9EBF1 | USP domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||