HalophFGD

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Basic Information
Locus ID: Lb7G33582
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Short Name: SCD1
Description: DENN domain and WD repeat-containing protein SCD1
Maps and Mapping Data
Chromosome Start End Strand ID
chr07 95653151 95659030 + Lb7G33582
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.09 77,458.66 Da 43.78 78.00 -0.43
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00200 WD40 329 627 5.07113E-57 -
CDD cd00200 WD40 329 627 5.07113E-57 -
Pfam PF00400 WD domain, G-beta repeat 386 419 0.0033 IPR001680
Pfam PF00400 WD domain, G-beta repeat 506 542 0.045 IPR001680
Pfam PF00400 WD domain, G-beta repeat 425 460 4.4E-4 IPR001680
Pfam PF00400 WD domain, G-beta repeat 328 377 0.0016 IPR001680
Pfam PF00400 WD domain, G-beta repeat 547 583 0.0015 IPR001680
Pfam PF00400 WD domain, G-beta repeat 506 542 0.045 IPR001680
Pfam PF00400 WD domain, G-beta repeat 386 419 0.0033 IPR001680
Pfam PF00400 WD domain, G-beta repeat 328 377 0.0016 IPR001680
Pfam PF00400 WD domain, G-beta repeat 547 583 0.0015 IPR001680
Pfam PF00400 WD domain, G-beta repeat 425 460 4.4E-4 IPR001680
SUPERFAMILY SSF50978 WD40 repeat-like 330 692 2.66E-62 IPR036322
SUPERFAMILY SSF50978 WD40 repeat-like 330 692 2.66E-62 IPR036322
Gene3D G3DSA:2.130.10.10 - 244 473 6.7E-28 IPR015943
Gene3D G3DSA:2.130.10.10 - 474 695 4.8E-32 IPR015943
Gene3D G3DSA:2.130.10.10 - 244 473 6.7E-28 IPR015943
Gene3D G3DSA:2.130.10.10 - 474 695 4.8E-32 IPR015943
SMART SM00320 WD40_4 505 542 0.0012 IPR001680
SMART SM00320 WD40_4 326 377 0.27 IPR001680
SMART SM00320 WD40_4 545 584 2.2E-7 IPR001680
SMART SM00320 WD40_4 422 460 5.1E-5 IPR001680
SMART SM00320 WD40_4 591 628 390.0 IPR001680
SMART SM00320 WD40_4 505 542 0.0012 IPR001680
SMART SM00320 WD40_4 422 460 5.1E-5 IPR001680
SMART SM00320 WD40_4 463 502 0.92 IPR001680
SMART SM00320 WD40_4 591 628 390.0 IPR001680
SMART SM00320 WD40_4 382 419 2.9E-4 IPR001680
SMART SM00320 WD40_4 652 691 0.78 IPR001680
SMART SM00320 WD40_4 652 691 0.78 IPR001680
SMART SM00320 WD40_4 545 584 2.2E-7 IPR001680
SMART SM00320 WD40_4 326 377 0.27 IPR001680
SMART SM00320 WD40_4 382 419 2.9E-4 IPR001680
SMART SM00320 WD40_4 463 502 0.92 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 389 419 9.151057 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 512 551 9.305395 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 389 419 10.909469 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 389 419 9.151057 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 552 584 13.181907 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 512 551 9.305395 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 429 463 9.968326 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 429 469 12.480124 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 552 584 10.943775 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 552 584 13.181907 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 552 584 10.943775 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 429 469 12.480124 IPR001680
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 389 419 10.909469 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 429 463 9.968326 -
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 678 692 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 447 461 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 447 461 - IPR019775
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 678 692 - IPR019775
PRINTS PR00320 G protein beta WD-40 repeat signature 447 461 3.4E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 571 585 3.4E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 406 420 3.4E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 406 420 3.4E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 571 585 3.4E-6 IPR020472
PRINTS PR00320 G protein beta WD-40 repeat signature 447 461 3.4E-6 IPR020472
MobiDBLite mobidb-lite consensus disorder prediction 303 324 - -
MobiDBLite mobidb-lite consensus disorder prediction 303 324 - -
MobiDBLite mobidb-lite consensus disorder prediction 254 273 - -
MobiDBLite mobidb-lite consensus disorder prediction 254 273 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G49040.1 stomatal cytokinesis defective / SCD1 protein (SCD1). Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. 0
RefSeq XP_010663578.1 PREDICTED: DENN domain and WD repeat-containing protein SCD1 isoform X3 [Vitis vinifera] 0
Swiss-Prot Q8RXA7 DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana OX=3702 GN=SCD1 PE=1 SV=1 0
TrEMBL A0A8X7YNH2 Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_041938 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg26987
Aizoaceae Mesembryanthemum crystallinum 1 gene_22578
Amaranthaceae Atriplex hortensis 1 Ah002039
Amaranthaceae Beta vulgaris 2 BVRB_5g110800, BVRB_5g110810
Amaranthaceae Salicornia bigelovii 2 Sbi_jg28100, Sbi_jg32435
Amaranthaceae Salicornia europaea 1 Seu_jg7325
Amaranthaceae Suaeda aralocaspica 1 GOSA_00015748
Amaranthaceae Suaeda glauca 4 Sgl53780, Sgl53785, Sgl59043, Sgl59048
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000006812, gene:ENSEOMG00000022168 ...
gene:ENSEOMG00000022200
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.2AG0010700, CQ.Regalona.r1.3AG0015290 ...
CQ.Regalona.r1.5AG0015840, CQ.Regalona.r1.5AG0015850, CQ.Regalona.r1.5BG0017310
Anacardiaceae Pistacia vera 1 pistato.v30146250
Apiaceae Apium graveolens 1 Ag8G00689
Arecaceae Cocos nucifera 1 COCNU_06G001720
Arecaceae Phoenix dactylifera 1 gene-LOC103712861
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.1767.V1.1
Asteraceae Flaveria trinervia 1 Ftri5G21468
Brassicaceae Arabidopsis thaliana 1 AT1G49040.1
Brassicaceae Eutrema salsugineum 1 Thhalv10011186m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp1g35950.v2.2
Brassicaceae Brassica nigra 3 BniB04g061410.2N, BniB04g061420.2N, BniB07g008560.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq03G2407
Casuarinaceae Casuarina glauca 1 Cgl03G2546
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno16g01280
Dunaliellaceae Dunaliella salina 2 Dusal.0074s00025.v1.0, Dusal.1115s00001.v1.0
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g18560
Nitrariaceae Nitraria sibirica 1 evm.TU.LG10.393
Plantaginaceae Plantago ovata 1 Pov_00033367
Plumbaginaceae Limonium bicolor 4 Lb7G33581, Lb7G33582, Lb7G33899, Lb7G33920
Poaceae Echinochloa crus-galli 3 AH02.2105, BH02.2171, CH02.2332
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_1AG0021780, gene-QOZ80_1BG0071730
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0267340.1
Poaceae Lolium multiflorum 1 gene-QYE76_053426
Poaceae Oryza coarctata 1 Oco01G013100
Poaceae Oryza sativa 1 LOC_Os01g39380.1
Poaceae Paspalum vaginatum 1 gene-BS78_03G171900
Poaceae Puccinellia tenuiflora 2 Pt_Chr0603071, Pt_Chr0603098
Poaceae Sporobolus alterniflorus 2 Chr05G016920, Chr08G009050
Poaceae Thinopyrum elongatum 1 Tel3E01G361500
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG030960, gene_TRIDC3BG035530
Poaceae Triticum aestivum 3 TraesCS3A02G204600.3, TraesCS3B02G236700.5 ...
TraesCS3D02G210700.6
Poaceae Zea mays 1 Zm00001eb160220_P001
Poaceae Zoysia japonica 1 nbis-gene-29429
Poaceae Zoysia macrostachya 1 Zma_g8107
Portulacaceae Portulaca oleracea 3 evm.TU.LG02.258, evm.TU.LG02.259, evm.TU.LG09.1496
Posidoniaceae Posidonia oceanica 1 gene.Posoc09g09950
Rhizophoraceae Bruguiera sexangula 1 evm.TU.Scaffold_4_RagTag.777
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-28585
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-21414
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-1599
Rhizophoraceae Kandelia candel 1 evm.TU.utg000008l.502
Rhizophoraceae Kandelia obovata 1 Maker00000915
Rhizophoraceae Rhizophora apiculata 1 nbisL1-mrna-14401
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-19268
Salicaceae Populus euphratica 3 populus_peu28383, populus_peu29836, populus_peu29949
Solanaceae Lycium barbarum 1 gene-LOC132633292
Solanaceae Solanum chilense 1 SOLCI006253400
Solanaceae Solanum pennellii 1 gene-LOC107014520
Tamaricaceae Reaumuria soongarica 1 STRG.14190_chr08_+
Tamaricaceae Tamarix chinensis 1 TC05G0860
Zosteraceae Zostera marina 2 Zosma05g14010.v3.1, Zosma05g14020.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.