halophFGD

Basic Information

Locus ID: Lb7G33577

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Domain of unknown function (DUF4283)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr07	95087084	95092827	-	Lb7G33577

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.81	76,522.91 Da	42.13	86.74	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01650	RT_nLTR_like	519	676	1.8699E-38	-
CDD	cd01650	RT_nLTR_like	519	676	1.8699E-38	-
Pfam	PF02902	Ulp1 protease family, C-terminal catalytic domain	174	256	2.5E-7	IPR003653
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	524	683	5.7E-38	IPR000477
Pfam	PF02902	Ulp1 protease family, C-terminal catalytic domain	174	256	2.5E-7	IPR003653
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	524	683	5.7E-38	IPR000477
SUPERFAMILY	SSF56672	DNA/RNA polymerases	470	674	1.48E-14	IPR043502
SUPERFAMILY	SSF56672	DNA/RNA polymerases	470	674	1.48E-14	IPR043502
SUPERFAMILY	SSF54001	Cysteine proteinases	148	257	4.32E-14	IPR038765
SUPERFAMILY	SSF54001	Cysteine proteinases	148	257	4.32E-14	IPR038765
Gene3D	G3DSA:3.40.395.10	Adenoviral Proteinase; Chain A	169	270	1.0E-11	-
Gene3D	G3DSA:3.40.395.10	Adenoviral Proteinase; Chain A	169	270	1.0E-11	-
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	505	687	10.495038	IPR000477
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	505	687	10.495038	IPR000477
ProSiteProfiles	PS50600	Ubiquitin-like protease family profile.	1	253	9.457365	IPR003653
ProSiteProfiles	PS50600	Ubiquitin-like protease family profile.	1	253	9.457365	IPR003653
MobiDBLite	mobidb-lite	consensus disorder prediction	1	41	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	41	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0008234 (cysteine-type peptidase activity)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_022015049.1	uncharacterized protein LOC110914567 [Helianthus annuus]
Swiss-Prot	Q03274	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1
TrEMBL	A0A7J0DA25	Reverse transcriptase domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0012980 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl83028, Sgl83243
Asteraceae	Flaveria trinervia	1	Ftri11G21610
Plumbaginaceae	Limonium bicolor	205	Lb0G36902, Lb0G37063, Lb0G37200, Lb0G37615, Lb0G37746 ... Lb1G00016, Lb1G00025, Lb1G00041, Lb1G00216, Lb1G00446, Lb1G00496, Lb1G00537, Lb1G00838, Lb1G00881, Lb1G01217, Lb1G01250, Lb1G01420, Lb1G01727, Lb1G01739, Lb1G01864, Lb1G02109, Lb1G02190, Lb1G02386, Lb1G02665, Lb1G02901, Lb1G04123, Lb1G04369, Lb1G04498, Lb1G04508, Lb1G04544, Lb1G04801, Lb1G04989, Lb1G05062, Lb1G05705, Lb1G06154, Lb1G06343, Lb1G06536, Lb1G07190, Lb1G07606, Lb1G08079, Lb1G08084, Lb2G08488, Lb2G08848, Lb2G09003, Lb2G09148, Lb2G09151, Lb2G09732, Lb2G10130, Lb2G10257, Lb2G10268, Lb2G10796, Lb2G11162, Lb2G11275, Lb2G11363, Lb2G11364, Lb2G11700, Lb2G11973, Lb2G12024, Lb2G12090, Lb2G12144, Lb2G12148, Lb2G12772, Lb2G14019, Lb2G14433, Lb2G14511, Lb2G14738, Lb2G14769, Lb2G14775, Lb2G14777, Lb2G14779, Lb2G14787, Lb2G14822, Lb2G14863, Lb2G15122, Lb3G15887, Lb3G15944, Lb3G16026, Lb3G16136, Lb3G16486, Lb3G16505, Lb3G16933, Lb3G16974, Lb3G18077, Lb3G18799, Lb3G19247, Lb3G19458, Lb3G19924, Lb3G20000, Lb3G20090, Lb3G20112, Lb3G20377, Lb3G21074, Lb3G21407, Lb4G21885, Lb4G22209, Lb4G22210, Lb4G22510, Lb4G23391, Lb4G23834, Lb4G24203, Lb4G24542, Lb4G24623, Lb4G24702, Lb4G25029, Lb4G25228, Lb4G25239, Lb4G25243, Lb4G25342, Lb4G25423, Lb4G25437, Lb4G25535, Lb4G25571, Lb4G26024, Lb4G26130, Lb4G26162, Lb4G26268, Lb4G26311, Lb4G26371, Lb5G26430, Lb5G26481, Lb5G26498, Lb5G26520, Lb5G26533, Lb5G26534, Lb5G26570, Lb5G26588, Lb5G26681, Lb5G26742, Lb5G26986, Lb5G26989, Lb5G27035, Lb5G27103, Lb5G27152, Lb5G27158, Lb5G27187, Lb5G27188, Lb5G27190, Lb5G27320, Lb5G27668, Lb5G28081, Lb5G28149, Lb5G28249, Lb5G28756, Lb5G28862, Lb5G29295, Lb5G29470, Lb5G29520, Lb5G29610, Lb6G29651, Lb6G30138, Lb6G30357, Lb6G30358, Lb6G30382, Lb6G30561, Lb6G30663, Lb6G30781, Lb6G30811, Lb6G30830, Lb6G30840, Lb6G30846, Lb6G30864, Lb6G30937, Lb6G31137, Lb6G31222, Lb6G31418, Lb6G31748, Lb6G31849, Lb6G32045, Lb6G32399, Lb6G32595, Lb7G32703, Lb7G32755, Lb7G32868, Lb7G33086, Lb7G33313, Lb7G33361, Lb7G33383, Lb7G33437, Lb7G33438, Lb7G33475, Lb7G33577, Lb7G33692, Lb7G33720, Lb7G34424, Lb7G34589, Lb7G34667, Lb7G34684, Lb7G34766, Lb7G34767, Lb7G34778, Lb7G34790, Lb7G35224, Lb7G35252, Lb7G35388, Lb7G35405, Lb7G35411, Lb7G35542, Lb7G35545, Lb8G35638, Lb8G35639, Lb8G35768, Lb8G35859, Lb8G35969, Lb8G36442, Lb8G36575
Poaceae	Lolium multiflorum	4	gene-QYE76_040894, gene-QYE76_049498, gene-QYE76_050588 ... gene-QYE76_070047