Basic Information
Locus ID:
Lb7G33509
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 90427287 | 90433762 | - | Lb7G33509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 67,259.70 Da | 55.56 | 56.21 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 135 | 185 | 1.65109E-16 | - |
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 135 | 185 | 1.65109E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 283 | 331 | 6.2E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 205 | 266 | 1.6E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 205 | 266 | 1.6E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 283 | 331 | 6.2E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 333 | 5.59E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 571 | 599 | 5.49E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 273 | 1.65E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 333 | 5.59E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 571 | 599 | 5.49E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 213 | 9.27E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 273 | 1.65E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 213 | 9.27E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 262 | 517 | 1.1E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 219 | 2.1E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 219 | 2.1E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 262 | 517 | 1.1E-84 | - |
| SMART | SM00647 | ibrneu5 | 204 | 266 | 2.0E-23 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 270 | 340 | 0.024 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 270 | 340 | 0.024 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 204 | 266 | 2.0E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 131 | 344 | 51.393936 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 181 | 9.169853 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 131 | 344 | 51.393936 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 181 | 9.169853 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 576 | 595 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 576 | 595 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 538 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021843446.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Spinacia oleracea] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QFB2 | RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_185600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology