Basic Information
Locus ID:
Lb7G33414
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Protein ROOT INITIATION DEFECTIVE 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 82740948 | 82754413 | - | Lb7G33414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 29,403.82 Da | 36.59 | 67.19 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 96 | 145 | 8.7E-8 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 96 | 145 | 8.7E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 29 | 157 | 2.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 29 | 157 | 2.9E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 89 | 129 | 0.0057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 129 | 0.0057 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 132 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 132 | 9.203785 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49180.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009796052.1 | PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Nicotiana sylvestris] | 0 |
| Q9M3B4 | Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BLE7 | WD_REPEATS_REGION domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_038635 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||