Basic Information
Locus ID:
Lb7G33382
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 79519840 | 79524210 | - | Lb7G33382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 48,028.29 Da | 39.69 | 65.32 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 142 | 313 | 6.2E-78 | IPR004854 |
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 142 | 313 | 6.2E-78 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 135 | 237 | 1.4E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 238 | 311 | 3.2E-33 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 135 | 237 | 1.4E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 238 | 311 | 3.2E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 442 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_050290866.1 | uncharacterized protein LOC126729520 [Quercus robur] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8J4RC67 | Ubiquitin fusion degradation protein 1 homolog OS=Castanea mollissima OX=60419 GN=CMV_006036 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology