Basic Information
Locus ID:
Lb7G33201
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 65188751 | 65198175 | + | Lb7G33201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 92,282.25 Da | 34.56 | 80.41 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 347 | 403 | 5.75887E-27 | - |
| CDD | cd18635 | CD_CMT3_like | 347 | 403 | 5.75887E-27 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 348 | 403 | 2.0E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 75 | 182 | 2.0E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 409 | 773 | 4.0E-35 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 348 | 403 | 2.0E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 75 | 182 | 2.0E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 409 | 773 | 4.0E-35 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 336 | 404 | 1.1E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 234 | 773 | 4.54E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 336 | 404 | 1.1E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 234 | 773 | 4.54E-77 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 344 | 790 | 5.5E-208 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 566 | 739 | 5.5E-208 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 177 | 2.2E-45 | IPR043151 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 177 | 2.2E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 215 | 321 | 2.2E-16 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 566 | 739 | 5.5E-208 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 215 | 321 | 2.2E-16 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 344 | 790 | 5.5E-208 | - |
| SMART | SM00439 | BAH_4 | 73 | 192 | 3.8E-21 | IPR001025 |
| SMART | SM00298 | chromo_7 | 347 | 406 | 8.7E-9 | IPR000953 |
| SMART | SM00439 | BAH_4 | 73 | 192 | 3.8E-21 | IPR001025 |
| SMART | SM00298 | chromo_7 | 347 | 406 | 8.7E-9 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 416 | 770 | 1.2E-29 | IPR001525 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 416 | 770 | 1.2E-29 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 73 | 192 | 17.284409 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 348 | 401 | 12.286001 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 234 | 780 | 44.60886 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 73 | 192 | 17.284409 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 234 | 780 | 44.60886 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 348 | 401 | 12.286001 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 371 | 391 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 418 | 430 | - | IPR018117 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 418 | 430 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 371 | 391 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 461 | 475 | 4.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 507 | 520 | 4.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 507 | 520 | 4.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 235 | 251 | 4.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 461 | 475 | 4.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 235 | 251 | 4.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 795 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 214 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | V4U4Y7 | Cytosine-specific methyltransferase OS=Citrus clementina OX=85681 GN=CICLE_v10014232mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology