Basic Information
Locus ID:
Lb7G32942
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
GLT1
Description:
glutamate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 38798496 | 38808959 | + | Lb7G32942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 241,064.88 Da | 37.12 | 83.34 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02808 | GltS_FMN | 959 | 1323 | 5.53129E-153 | IPR002932 |
| CDD | cd00713 | GltS | 125 | 547 | 0.0 | - |
| CDD | cd00982 | gltB_C | 1358 | 1607 | 3.93579E-151 | IPR002489 |
| CDD | cd00982 | gltB_C | 1358 | 1607 | 3.93579E-151 | IPR002489 |
| CDD | cd00713 | GltS | 125 | 547 | 0.0 | - |
| CDD | cd02808 | GltS_FMN | 959 | 1323 | 5.53129E-153 | IPR002932 |
| Pfam | PF00310 | Glutamine amidotransferases class-II | 125 | 552 | 8.2E-186 | IPR017932 |
| Pfam | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | 1708 | 1816 | 1.4E-20 | IPR028261 |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 1829 | 2155 | 8.0E-23 | IPR023753 |
| Pfam | PF01493 | GXGXG motif | 1381 | 1567 | 9.5E-86 | IPR002489 |
| Pfam | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | 1708 | 1816 | 1.4E-20 | IPR028261 |
| Pfam | PF01645 | Conserved region in glutamate synthase | 957 | 1311 | 3.4E-133 | IPR002932 |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 1829 | 2155 | 8.0E-23 | IPR023753 |
| Pfam | PF00310 | Glutamine amidotransferases class-II | 125 | 552 | 8.2E-186 | IPR017932 |
| Pfam | PF01493 | GXGXG motif | 1381 | 1567 | 9.5E-86 | IPR002489 |
| Pfam | PF04898 | Glutamate synthase central domain | 602 | 890 | 9.0E-113 | IPR006982 |
| Pfam | PF01645 | Conserved region in glutamate synthase | 957 | 1311 | 3.4E-133 | IPR002932 |
| Pfam | PF04898 | Glutamate synthase central domain | 602 | 890 | 9.0E-113 | IPR006982 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 125 | 555 | 6.74E-152 | IPR029055 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 1826 | 2163 | 3.75E-57 | IPR036188 |
| SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 1684 | 1839 | 1.05E-35 | - |
| SUPERFAMILY | SSF69336 | Alpha subunit of glutamate synthase, C-terminal domain | 1350 | 1613 | 2.49E-97 | IPR036485 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 1826 | 2163 | 3.75E-57 | IPR036188 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 594 | 1329 | 2.73E-239 | - |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 594 | 1329 | 2.73E-239 | - |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 125 | 555 | 6.74E-152 | IPR029055 |
| SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 1684 | 1839 | 1.05E-35 | - |
| SUPERFAMILY | SSF69336 | Alpha subunit of glutamate synthase, C-terminal domain | 1350 | 1613 | 2.49E-97 | IPR036485 |
| Gene3D | G3DSA:3.40.50.720 | - | 1829 | 1935 | 1.7E-15 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 1936 | 2099 | 4.2E-30 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 1936 | 2099 | 4.2E-30 | IPR036188 |
| Gene3D | G3DSA:2.160.20.60 | - | 1354 | 1623 | 1.4E-110 | IPR036485 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 125 | 564 | 1.7E-199 | IPR029055 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 125 | 564 | 1.7E-199 | IPR029055 |
| Gene3D | G3DSA:1.10.1060.10 | - | 1666 | 1828 | 1.2E-40 | IPR009051 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 942 | 1351 | 1.6E-178 | IPR013785 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 942 | 1351 | 1.6E-178 | IPR013785 |
| Gene3D | G3DSA:3.40.50.720 | - | 1829 | 1935 | 1.7E-15 | - |
| Gene3D | G3DSA:1.10.1060.10 | - | 1666 | 1828 | 1.2E-40 | IPR009051 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 578 | 941 | 3.3E-134 | IPR013785 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 578 | 941 | 3.3E-134 | IPR013785 |
| Gene3D | G3DSA:2.160.20.60 | - | 1354 | 1623 | 1.4E-110 | IPR036485 |
| TIGRFAM | TIGR01317 | GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit | 1684 | 2167 | 1.2E-224 | IPR006005 |
| TIGRFAM | TIGR01317 | GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit | 1684 | 2167 | 1.2E-224 | IPR006005 |
| PIRSF | PIRSF000187 | GOGAT | 59 | 2195 | 0.0 | IPR012220 |
| PIRSF | PIRSF000187 | GOGAT | 59 | 2195 | 0.0 | IPR012220 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 125 | 529 | 23.514906 | IPR017932 |
| ProSiteProfiles | PS51278 | Glutamine amidotransferase type 2 domain profile. | 125 | 529 | 23.514906 | IPR017932 |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1896 | 1906 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1830 | 1852 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1974 | 1988 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1896 | 1906 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1830 | 1852 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1853 | 1866 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1853 | 1866 | 1.5E-23 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 1974 | 1988 | 1.5E-23 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2181 | 2195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1615 | 1642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1627 | 1642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2175 | 2195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2175 | 2195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1615 | 1642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1627 | 1642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2181 | 2195 | - | - |
| Coils | Coil | Coil | 1561 | 1581 | - | - |
| Coils | Coil | Coil | 1561 | 1581 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
GO:0003824 (catalytic activity)
GO:0005506 (iron ion binding)
GO:0010181 (FMN binding)
GO:0015930 (glutamate synthase activity)
GO:0016040 (glutamate synthase (NADH) activity)
GO:0016491 (oxidoreductase activity)
GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors)
GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor)
GO:0050660 (flavin adenine dinucleotide binding)
GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53460.1 | NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase | 0 |
| RefSeq | XP_016737321.2 | glutamate synthase 1 [NADH], chloroplastic isoform X1 [Gossypium hirsutum] | 0 |
| Q9LV03 | Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D2SRP4 | glutamate synthase (NADH) OS=Gossypium raimondii OX=29730 GN=B456_008G269600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13893, jg2196 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3295 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018647 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15107, Sbi_jg55939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26420 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020044 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30185180 |
| Apiaceae | Apium graveolens | 2 | Ag10G02525, AgUnG00467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013130, scaffold000561G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708325, gene-LOC103713334 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2833.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012414m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15593.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g016600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1742 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g12650, gene.Cymno12g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24920, gene.Thate09g14990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37740, Lb7G32942 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0280530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054594, gene-QYE76_054602 |
| Poaceae | Oryza coarctata | 4 | Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48960.1, LOC_Os05g48200.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G233100, gene-BS78_03G236800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602367 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G012560, Chr03G013590, Chr08G013750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G442300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG039670, gene_TRIDC3BG044820 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G266300.1, TraesCS3B02G299800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156610_P002, Zm00001eb295220_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12580, nbis-gene-26118 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10886, Zma_g8437 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1967 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13790, gene.Posoc09g09130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3559, nbisL1-mrna-7507 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2555, nbisL1-mrna-921 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14013, nbisL1-mrna-5641 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.314, evm.TU.utg000012l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005974, Maker00011451 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2744, nbisL1-mrna-8412 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16769, nbisL1-mrna-743 |
| Salicaceae | Populus euphratica | 3 | populus_peu28067, populus_peu29502, populus_peu29503 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632063 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013700 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5260 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1506 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06270.v3.1, Zosma01g22390.v3.1 |