Basic Information
Locus ID:
Lb6G32618
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 293025572 | 293032068 | - | Lb6G32618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 71,146.54 Da | 37.70 | 80.37 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 492 | 557 | 5.7E-8 | IPR020683 |
| Pfam | PF04434 | SWIM zinc finger | 396 | 424 | 2.6E-5 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 396 | 424 | 2.6E-5 | IPR007527 |
| Pfam | PF10551 | MULE transposase domain | 166 | 264 | 2.4E-12 | IPR018289 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 492 | 557 | 5.7E-8 | IPR020683 |
| Pfam | PF10551 | MULE transposase domain | 166 | 264 | 2.4E-12 | IPR018289 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 270 | 582 | 2.8E-18 | IPR036770 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 270 | 582 | 2.8E-18 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 460 | 592 | 9.3E-21 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 460 | 592 | 9.3E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 526 | 555 | 9.8E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 526 | 555 | 9.8E-4 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 526 | 558 | 13.57085 | IPR002110 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 396 | 428 | 9.61879 | IPR007527 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 526 | 558 | 13.57085 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 526 | 558 | 12.195709 | - |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 396 | 428 | 9.61879 | IPR007527 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 526 | 558 | 12.195709 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14000.1 | VH1-interacting kinase. Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling. | 0 |
| RefSeq | XP_029125701.1 | uncharacterized protein LOC109791414 [Cajanus cajan] | 0 |
| Q9XI87 | Serine/threonine-protein kinase VIK OS=Arabidopsis thaliana OX=3702 GN=VIK PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J8MFL9 | ANK_REP_REGION domain-containing protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_008351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||