halophFGD

Basic Information

Locus ID: Lb6G32611

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Uncharacterised ACR, YagE family COG1723

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr06	292756588	292766306	+	Lb6G32611

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	79,280.12 Da	43.68	87.79	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02582	Uncharacterised ACR, YagE family COG1723	477	646	5.4E-25	IPR003734
Pfam	PF02582	Uncharacterised ACR, YagE family COG1723	477	646	5.4E-25	IPR003734
Pfam	PF13456	Reverse transcriptase-like	298	396	1.0E-6	IPR002156
Pfam	PF13456	Reverse transcriptase-like	298	396	1.0E-6	IPR002156
SUPERFAMILY	SSF53098	Ribonuclease H-like	272	394	3.04E-6	IPR012337
SUPERFAMILY	SSF53098	Ribonuclease H-like	272	394	3.04E-6	IPR012337
Gene3D	G3DSA:3.30.420.10	-	274	401	8.1E-6	IPR036397
Gene3D	G3DSA:3.30.420.10	-	274	401	8.1E-6	IPR036397
MobiDBLite	mobidb-lite	consensus disorder prediction	63	86	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	109	123	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	127	143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	63	86	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	109	123	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	179	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	127	143	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	109	179	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	109	179	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	148	179	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G69380.1	Protein of unknown function (DUF155).
RefSeq	XP_008360101.1	uncharacterized protein LOC103423798 [Malus domestica]
Swiss-Prot	Q9C565	Protein RETARDED ROOT GROWTH, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RRG PE=1 SV=1
TrEMBL	A0A498HLC1	DUF155 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_007227 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg2730, jg7132
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12982, gene_18280
Amaranthaceae	Atriplex hortensis	2	Ah013069, Ah033531
Amaranthaceae	Beta vulgaris	1	BVRB_6g153100
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg20763, Sbi_jg22993, Sbi_jg43000, Sbi_jg45608 ... Sbi_jg60621
Amaranthaceae	Salicornia europaea	2	Seu_jg11453, Seu_jg16866
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002077, GOSA_00009294
Amaranthaceae	Suaeda glauca	3	Sgl35728, Sgl35751, Sgl41045
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001071, gene:ENSEOMG00000013252 ... gene:ENSEOMG00000017944, gene:ENSEOMG00000020164, gene:ENSEOMG00000025304, gene:ENSEOMG00000048213
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0011630, CQ.Regalona.r1.6BG0000320
Anacardiaceae	Pistacia vera	2	pistato.v30171640, pistato.v30227250
Apiaceae	Apium graveolens	3	Ag10G01054, Ag11G04660, Ag8G01362
Arecaceae	Cocos nucifera	3	COCNU_06G016800, contig69490076G000010 ... scaffold013337G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103698205, gene-LOC103698775, gene-LOC103710607
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2030.V1.1, AsparagusV1_07.373.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G06272, Ftri17G29177, Ftri18G22505, Ftri9G19088
Brassicaceae	Arabidopsis thaliana	2	AT1G69380.1, AT5G13610.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013692m.g.v1.0, Thhalv10018736m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g24430.v2.2, Sp6g30420.v2.2
Brassicaceae	Brassica nigra	4	BniB02g048940.2N, BniB03g046750.2N, BniB05g024710.2N ... BniB05g066330.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0663, Ceq02G0667, Ceq07G1198
Casuarinaceae	Casuarina glauca	2	Cgl02G0677, Cgl07G1262
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g16070, gene.Cymno05g15840
Dunaliellaceae	Dunaliella salina	5	Dusal.0041s00027.v1.0, Dusal.0291s00006.v1.0 ... Dusal.0291s00007.v1.0, Dusal.0352s00011.v1.0, Dusal.1124s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g33160, gene.Thate07g00620
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1995
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1477, evm.TU.LG03.325
Plantaginaceae	Plantago ovata	2	Pov_00027052, Pov_00040380
Plumbaginaceae	Limonium bicolor	3	Lb1G02822, Lb6G32611, Lb6G32625
Poaceae	Echinochloa crus-galli	5	AH02.3364, AH03.4156, BH02.3606, CH02.3138, CH07.13
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1AG0034270, gene-QOZ80_1BG0084340 ... gene-QOZ80_7BG0614050
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0107730.1, HORVU.MOREX.r3.3HG0291130.1
Poaceae	Lolium multiflorum	2	gene-QYE76_038500, gene-QYE76_055074
Poaceae	Oryza coarctata	4	Oco01G021040, Oco02G021620, Oco13G016730, Oco14G017500
Poaceae	Oryza sativa	2	LOC_Os01g55860.1, LOC_Os07g49410.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G397900, gene-BS78_02G401400 ... gene-BS78_03G286000
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0305263, Pt_Chr0500406, Pt_Chr0602729
Poaceae	Sporobolus alterniflorus	5	Chr03G016910, Chr05G024670, Chr19G000010, Chr24G011550 ... Chr27G017530
Poaceae	Thinopyrum elongatum	5	Tel2E01G178800, Tel2E01G957500, Tel3E01G488500 ... Tel5E01G210500, Tel6E01G602400
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG009050, gene_TRIDC2AG058940 ... gene_TRIDC2BG010820, gene_TRIDC3AG044460, gene_TRIDC3BG034690, gene_TRIDC3BG050340
Poaceae	Triticum aestivum	5	TraesCS2A02G082000.1, TraesCS2B02G096100.1 ... TraesCS3A02G302000.2, TraesCS3B02G334600.1, TraesCS3D02G300000.1
Poaceae	Zea mays	2	Zm00001eb152270_P003, Zm00001eb331610_P001
Poaceae	Zoysia japonica	3	nbis-gene-10, nbis-gene-11841, nbis-gene-9
Poaceae	Zoysia macrostachya	2	Zma_g7137, Zma_g8720
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.884, evm.TU.LG05.2052, evm.TU.LG13.444 ... evm.TU.LG21.143
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g35880, gene.Posoc03g13250, gene.Posoc06g17400 ... gene.Posoc07g14410
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.474, evm.TU.Scaffold_15_RagTag.582 ... evm.TU.Scaffold_4_RagTag.1658
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13983, nbisL1-mrna-13984, nbisL1-mrna-26083 ... nbisL1-mrna-26750
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13733, nbisL1-mrna-17860
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15787, nbisL1-mrna-4470
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000005l.45, evm.TU.utg000001l.292 ... evm.TU.utg000008l.918
Rhizophoraceae	Kandelia obovata	2	Maker00000751, Maker00002529
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11372, nbisL1-mrna-2134
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23493, nbisL1-mrna-9517
Salicaceae	Populus euphratica	4	populus_peu06330, populus_peu06770, populus_peu20163 ... populus_peu20667
Solanaceae	Lycium barbarum	2	gene-LOC132614417, gene-LOC132642004
Solanaceae	Solanum chilense	2	SOLCI003402700, SOLCI005208100
Solanaceae	Solanum pennellii	2	gene-LOC107018188, gene-LOC107018693
Tamaricaceae	Reaumuria soongarica	5	STRG.28402_chr04_-, gene_2114, gene_2115, gene_2116 ... gene_5766
Tamaricaceae	Tamarix chinensis	3	TC02G2249, TC02G3554, TC03G0823
Zosteraceae	Zostera marina	2	Zosma01g18730.v3.1, Zosma02g18720.v3.1