Basic Information
Locus ID:
Lb6G32410
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 286216277 | 286220715 | - | Lb6G32410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 58,045.47 Da | 63.27 | 69.44 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 147 | 199 | 3.25044E-29 | - |
| CDD | cd09396 | LIM_DA1 | 147 | 199 | 3.25044E-29 | - |
| Pfam | PF12315 | Protein DA1 | 296 | 511 | 3.4E-104 | IPR022087 |
| Pfam | PF00412 | LIM domain | 147 | 201 | 4.7E-10 | IPR001781 |
| Pfam | PF00412 | LIM domain | 147 | 201 | 4.7E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 296 | 511 | 3.4E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 140 | 172 | 5.99E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 140 | 172 | 5.99E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 173 | 229 | 3.95E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 173 | 229 | 3.95E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 138 | 204 | 7.5E-15 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 138 | 204 | 7.5E-15 | - |
| SMART | SM00726 | uim | 46 | 65 | 0.77 | IPR003903 |
| SMART | SM00132 | lim_4 | 146 | 198 | 1.6E-12 | IPR001781 |
| SMART | SM00726 | uim | 103 | 122 | 0.13 | IPR003903 |
| SMART | SM00726 | uim | 103 | 122 | 0.13 | IPR003903 |
| SMART | SM00132 | lim_4 | 146 | 198 | 1.6E-12 | IPR001781 |
| SMART | SM00726 | uim | 46 | 65 | 0.77 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 103 | 122 | 10.122365 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 145 | 205 | 11.9296 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 103 | 122 | 10.122365 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 145 | 205 | 11.9296 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 147 | 181 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 147 | 181 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 463 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_027153838.1 | protein DA1-related 1-like [Coffea eugenioides] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B7ATH8 | LIM zinc-binding domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_029215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology