halophFGD

Basic Information

Locus ID: Lb6G32293

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: SPA1-related

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr06	280820305	280828802	+	Lb6G32293

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.56	101,119.18 Da	57.62	76.26	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	686	722	3.3E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	771	806	0.0036	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	771	806	0.0036	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	686	722	3.3E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	598	907	1.32E-50	IPR036322
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	84	347	2.71E-18	IPR011009
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	84	347	2.71E-18	IPR011009
SUPERFAMILY	SSF50978	WD40 repeat-like	598	907	1.32E-50	IPR036322
Gene3D	G3DSA:2.130.10.10	-	575	911	2.5E-119	IPR015943
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	94	350	1.1E-21	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	94	350	1.1E-21	-
Gene3D	G3DSA:2.130.10.10	-	575	911	2.5E-119	IPR015943
SMART	SM00320	WD40_4	870	909	30.0	IPR001680
SMART	SM00320	WD40_4	725	764	0.42	IPR001680
SMART	SM00320	WD40_4	768	806	5.2E-6	IPR001680
SMART	SM00320	WD40_4	725	764	0.42	IPR001680
SMART	SM00320	WD40_4	591	629	0.73	IPR001680
SMART	SM00320	WD40_4	768	806	5.2E-6	IPR001680
SMART	SM00220	serkin_6	11	346	0.0014	IPR000719
SMART	SM00320	WD40_4	682	722	5.1E-8	IPR001680
SMART	SM00320	WD40_4	643	679	53.0	IPR001680
SMART	SM00320	WD40_4	815	854	4.5	IPR001680
SMART	SM00220	serkin_6	11	346	0.0014	IPR000719
SMART	SM00320	WD40_4	591	629	0.73	IPR001680
SMART	SM00320	WD40_4	815	854	4.5	IPR001680
SMART	SM00320	WD40_4	870	909	30.0	IPR001680
SMART	SM00320	WD40_4	643	679	53.0	IPR001680
SMART	SM00320	WD40_4	682	722	5.1E-8	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	775	808	10.07378	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	775	808	10.07378	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	775	808	12.079106	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	689	731	13.014815	IPR001680
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	360	9.446472	IPR000719
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	689	726	9.99469	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	360	9.446472	IPR000719
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	689	726	9.99469	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	689	731	13.014815	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	775	808	12.079106	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	793	807	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	793	807	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	666	680	4.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	709	723	4.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	793	807	4.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	793	807	4.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	666	680	4.2E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	709	723	4.2E-6	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	470	489	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	448	494	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	470	489	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	525	547	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	525	547	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	531	547	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	531	547	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	448	494	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K10143 (E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27])

Pathway:

map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04712 (Circadian rhythm - plant) map04712 (Circadian rhythm - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15354.3	-
RefSeq	XP_010694977.2	protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9LJR3	Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1
TrEMBL	A0A0J8BAN3	Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096680 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg21401, jg38283, jg4742, jg7679
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12461, gene_14681, gene_23565
Amaranthaceae	Atriplex hortensis	3	Ah004494, Ah008097, Ah022887
Amaranthaceae	Beta vulgaris	2	BVRB_1g003520, BVRB_5g099340
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18651, Sbi_jg23996, Sbi_jg37085, Sbi_jg4000 ... Sbi_jg49209, Sbi_jg7824
Amaranthaceae	Salicornia europaea	3	Seu_jg12208, Seu_jg4907, Seu_jg6034
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000547, GOSA_00001091, GOSA_00006854
Amaranthaceae	Suaeda glauca	8	Sgl10963, Sgl16337, Sgl16365, Sgl23184, Sgl23197, Sgl28266 ... Sgl52160, Sgl57429
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006155, gene:ENSEOMG00000011056 ... gene:ENSEOMG00000012712, gene:ENSEOMG00000021956, gene:ENSEOMG00000024032, gene:ENSEOMG00000027778, gene:ENSEOMG00000036606, gene:ENSEOMG00000043390, gene:ENSEOMG00000050270
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0001800, CQ.Regalona.r1.4AG0019630 ... CQ.Regalona.r1.4BG0019970, CQ.Regalona.r1.5AG0006200, CQ.Regalona.r1.5BG0006550
Anacardiaceae	Pistacia vera	4	pistato.v30005470, pistato.v30134820, pistato.v30134830 ... pistato.v30161140
Apiaceae	Apium graveolens	3	Ag11G03149, Ag3G00381, Ag6G00115
Arecaceae	Cocos nucifera	5	COCNU_06G002990, COCNU_06G004150, COCNU_14G000140 ... contig69346437G000010, contig69362463G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103708348, gene-LOC103709020, gene-LOC103713473 ... gene-LOC103721280, gene-LOC120112296
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1508.V1.1, AsparagusV1_01.1509.V1.1 ... AsparagusV1_05.2729.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G30603, Ftri14G11337, Ftri14G18322, Ftri15G03900 ... Ftri3G27466, Ftri3G31722, Ftri4G24176, Ftri7G23246
Brassicaceae	Arabidopsis thaliana	4	AT1G53090.1, AT2G46340.1, AT3G15354.1, AT4G11110.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001291m.g.v1.0, Thhalv10011249m.g.v1.0 ... Thhalv10012045m.g.v1.0, Thhalv10020057m.g.v1.0, Thhalv10028383m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g39640.v2.2, Sp3g13540.v2.2, Sp4g28380.v2.2 ... Sp6g06310.v2.2
Brassicaceae	Brassica nigra	6	BniB01g049680.2N, BniB05g061940.2N, BniB06g027650.2N ... BniB08g030130.2N, BniB08g050940.2N, BniS06172g140.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1036, Ceq03G0200
Casuarinaceae	Casuarina glauca	4	Cgl01G1149, Cgl01G1208, Cgl03G0226, Cgl03G0248
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g16740, gene.Cymno07g06000, gene.Cymno12g01770
Dunaliellaceae	Dunaliella salina	1	Dusal.0369s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g12060, gene.Thate07g17950, gene.Thate09g15220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-11216, nbisL1-mrna-11217, nbisL1-mrna-8290 ... nbisL1-mrna-8291
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.748, evm.TU.LG05.1603, evm.TU.LG10.1503
Plantaginaceae	Plantago ovata	3	Pov_00005319, Pov_00028431, Pov_00031342
Plumbaginaceae	Limonium bicolor	3	Lb2G08269, Lb2G11186, Lb6G32293
Poaceae	Echinochloa crus-galli	6	AH02.3029, AH05.1331, BH02.3114, BH05.1504, CH02.3403 ... CH05.1703
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0031720, gene-QOZ80_1BG0081920 ... gene-QOZ80_5AG0362570, gene-QOZ80_5BG0410740
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0090370.1, HORVU.MOREX.r3.3HG0286130.1
Poaceae	Lolium multiflorum	3	gene-QYE76_055005, gene-QYE76_055006, gene-QYE76_057161
Poaceae	Oryza coarctata	4	Oco01G020160, Oco02G019610, Oco09G017270, Oco10G017070
Poaceae	Oryza sativa	2	LOC_Os01g52640.3, LOC_Os05g49590.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G261700, gene-BS78_09G241700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0505606, Pt_Chr0505671, Pt_Chr0602795, Pt_Chr0602796 ... Pt_Chr0602808
Poaceae	Sporobolus alterniflorus	10	Chr01G015840, Chr02G010760, Chr03G015280, Chr08G015340 ... Chr0G026410, Chr0G031010, Chr12G020890, Chr18G016590, Chr20G007260, Chr22G000840
Poaceae	Thinopyrum elongatum	2	Tel1E01G678500, Tel3E01G467500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG060430, gene_TRIDC1BG069180 ... gene_TRIDC3AG042090, gene_TRIDC3BG047690
Poaceae	Triticum aestivum	5	TraesCS1D02G417600.1, TraesCS3A02G284700.2 ... TraesCS3B02G318600.1, TraesCS3D02G284500.2, TraesCS7A02G175900.1
Poaceae	Zea mays	6	Zm00001eb026560_P002, Zm00001eb154420_P004 ... Zm00001eb274370_P001, Zm00001eb296410_P001, Zm00001eb344140_P001, Zm00001eb361760_P002
Poaceae	Zoysia japonica	1	nbis-gene-12784
Poaceae	Zoysia macrostachya	2	Zma_g27411, Zma_g28832
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.723, evm.TU.LG04.3288, evm.TU.LG09.1894 ... evm.TU.LG16.312, evm.TU.LG19.1258, evm.TU.LG24.1260
Posidoniaceae	Posidonia oceanica	3	gene.Posoc08g10450, gene.Posoc09g05600, gene.Posoc09g08550
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.106, evm.TU.Scaffold_5_RagTag.211 ... evm.TU.Scaffold_9_RagTag.176
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-21867, nbisL1-mrna-22351
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13591, nbisL1-mrna-3278, nbisL1-mrna-4390 ... nbisL1-mrna-9099
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10580, nbisL1-mrna-20376, nbisL1-mrna-7523
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.118, evm.TU.utg000006l.134 ... evm.TU.utg000022l.428
Rhizophoraceae	Kandelia obovata	3	Maker00013075, Maker00014245, Maker00017561
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-3569, nbisL1-mrna-6744, nbisL1-mrna-9156
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21701, nbisL1-mrna-6739, nbisL1-mrna-7085
Salicaceae	Populus euphratica	7	populus_peu00525, populus_peu00528, populus_peu03654 ... populus_peu17574, populus_peu27593, populus_peu34503, populus_peu38177
Solanaceae	Lycium barbarum	4	gene-LOC132620297, gene-LOC132632465, gene-LOC132634818 ... gene-LOC132636473
Solanaceae	Solanum chilense	4	SOLCI000577800, SOLCI002243500, SOLCI002865300 ... SOLCI005350500
Solanaceae	Solanum pennellii	4	gene-LOC107002639, gene-LOC107007180, gene-LOC107026003 ... gene-LOC107028458
Tamaricaceae	Reaumuria soongarica	3	STRG.23360_chr05_+, STRG.3284_chr01_+, STRG.9708_chr06_+
Tamaricaceae	Tamarix chinensis	3	TC01G4251, TC07G0211, TC09G2308
Zosteraceae	Zostera marina	2	Zosma01g23410.v3.1, Zosma05g03450.v3.1